Downloads

NameDescriptionNumber of SequencesFile SizeFile ExtensionLast UpdatedDownload
PHAST-BSD Bacterial DatabaseLocally curated database of bacterial proteins sequences, used for deep annotation mode.16,000,0006GB.dbDec 22, 2020file_download
Prophage DatabaseLocally curated database of phage protein sequences, used for phage region identification.420,000128MB.dbDec 22, 2020file_download
Swissprot DatabaseBacterial sequence database curated by UniProt, used for lite annotation mode.569,000269MB.fastaMar 01, 2023file_download
Docker ImageDocker Image containing the PHASTEST back end code, used to run PHASTEST pipeline locally.n/a1.2GB.zipFeb 24, 2023file_download
Docker DatabasePHASTEST phage database and bacterial sequence database prepared for use with the PHASTEST Docker image.n/a12GB.zipFeb 24, 2023file_download
PHASTEST Docker Set Up Instructions

1. Download PHASTEST docker image and docker database above

2. Unzip the PHASTEST docker image

3. Move content of docker database file to the "/path/to/dockerfile/phastest-app-docker/DB" directory

4. Run container with "docker compose run phastest -i genbank -a {genbank_accession}" if input file is genbank accession

5. Run container with "docker compose run phastest -i fasta -s {input_file.fna}" if input file is FASTA sequence

6. Run container with "docker compose run phastest -i contig -s {input_file.fna}" if input file is metagenomic contig

7. For more details, run "docker compose run phastest help"


We require the use of cookies for essential features like storing your previously submitted PHASTEST queries. Rejecting the usage of cookies will result in certain features being disabled. By clicking ACCEPT or continuing to use the website you are agreeing to our use of cookies.

ACCEPT