NameDescriptionNumber of SequencesFile SizeFile ExtensionLast UpdatedDownload
PHAST-BSD Bacterial DatabaseLocally curated database of bacterial proteins sequences, used for deep annotation mode.16,000,0006GB.dbDec 22, 2020file_download
Prophage DatabaseLocally curated database of phage protein sequences, used for phage region identification.420,000128MB.dbDec 22, 2020file_download
Swissprot DatabaseBacterial sequence database curated by UniProt, used for lite annotation mode.569,000269MB.fastaMar 01, 2023file_download
Docker ImageDocker Image containing the PHASTEST back end code, used to run PHASTEST pipeline locally.16,611,000351MB.zipAugust 24, 2023file_download
PHASTEST Docker Set Up Instructions

1. Download PHASTEST docker image above

2. Unzip the PHASTEST docker image

3. In the command line, enter the phastest-docker folder

4. "docker build -t phastest-docker ." to build the containers

5. "docker run phastest-docker" to start the containers

6. Enter the phastest-app directory

7. Create a directory for your files in the JOBS directory

8. Call PHASTEST with "scripts/ -s your_folder_name" to run PHASTEST on a FASTA file, or "scripts/ -g your_folder_name" to run it on a GenBank file

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