Downloads

NameDescriptionNumber of SequencesFile SizeFile ExtensionLast UpdatedDownload
PHAST-BSD Bacterial DatabaseLocally curated database of bacterial proteins sequences, used for deep annotation mode.16,000,0006GB.dbDec 22, 2020file_download
Prophage DatabaseLocally curated database of phage protein sequences, used for phage region identification.420,000128MB.dbDec 22, 2020file_download
Swissprot DatabaseBacterial sequence database curated by UniProt, used for lite annotation mode.569,000269MB.fastaMar 01, 2023file_download
Docker ImageDocker Image containing the PHASTEST back end code, used to run PHASTEST pipeline locally.n/a1.0GB.zipJan 27, 2025file_download
Docker DatabasePHASTEST phage database and bacterial sequence database prepared for use with the PHASTEST Docker image.n/a9GB.zipJan 27, 2025file_download
PHASTEST Docker Set Up Instructions

1. Download PHASTEST docker image and docker database above

2. Unzip the PHASTEST docker image

3. Move content of docker database file to the "/path/to/dockerfile/phastest-app-docker/DB" directory

4. Run container with "docker compose run phastest -i genbank -a {genbank_accession}" if input file is genbank accession

5. Run container with "docker compose run phastest -i fasta -s {input_file.fna}" if input file is FASTA sequence

6. Run container with "docker compose run phastest -i contig -s {input_file.fna}" if input file is metagenomic contig

7. For more details, run "docker compose run phastest help"


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