Downloads
Name | Description | Number of Sequences | File Size | File Extension | Last Updated | Download |
PHAST-BSD Bacterial Database | Locally curated database of bacterial proteins sequences, used for deep annotation mode. | 16,000,000 | 6GB | .db | Dec 22, 2020 | file_download |
Prophage Database | Locally curated database of phage protein sequences, used for phage region identification. | 420,000 | 128MB | .db | Dec 22, 2020 | file_download |
Swissprot Database | Bacterial sequence database curated by UniProt, used for lite annotation mode. | 569,000 | 269MB | .fasta | Mar 01, 2023 | file_download |
Docker Image | Docker Image containing the PHASTEST back end code, used to run PHASTEST pipeline locally. | N/A | 350MB | .zip | February 13, 2024 | file_download |
Docker Database Files | Database files set up to be used with the PHASTEST Docker Cluster. | 16,611,000 | 12GB | .zip | February 13, 2024 | file_download |
PHASTEST Docker Set Up Instructions
You must have Docker and Docker Compose installed
1. Download PHASTEST docker image and PHASTEST docker database above
2. Unzip the PHASTEST docker image
3. Unzip the database files, and place the contents into the phastest-app-docker/DB/ directory
4. "docker build -t phastest-docker ." to build the containers
5. "docker compose run phastest -i {genbank|fasta|contig} -a {accession number} -m {annotation mode} -s {sequence file name} [OPTIONS]..." to run PHASTEST
See README.md for more information