Downloads
| Name | Description | Number of Sequences | File Size | File Extension | Last Updated | Download |
| PHAST-BSD Bacterial Database | Locally curated database of bacterial proteins sequences, used for deep annotation mode. | 16,000,000 | 6GB | .db | Dec 22, 2020 | file_download |
| Prophage Database | Locally curated database of phage protein sequences, used for phage region identification. | 420,000 | 128MB | .db | Dec 22, 2020 | file_download |
| Swissprot Database | Bacterial sequence database curated by UniProt, used for lite annotation mode. | 569,000 | 269MB | .fasta | Mar 01, 2023 | file_download |
| Docker Image | Docker Image containing the PHASTEST back end code, used to run PHASTEST pipeline locally. | n/a | 1.2GB | .zip | Feb 24, 2023 | file_download |
PHASTEST Docker Set Up Instructions
1. Download PHASTEST docker image above
2. Unzip the PHASTEST docker image
3. In the command line, enter the phastest-docker folder
4. "docker build -t phastest-docker ." to build the containers
5. "docker run phastest-docker" to start the containers
6. Enter the phastest-app directory
7. Create a directory for your files in the JOBS directory
8. Call PHASTEST with "scripts/phastest.pl -s your_folder_name" to run PHASTEST on a FASTA file, or "scripts/phastest.pl -g your_folder_name" to run it on a GenBank file