Submission Results

Sequence Name: Not Available

GenBank Accession Number: PP717790.1

Download Results: PP717790.1.PHASTEST.zip

gi|00000000|ref|NC_000000| Acinetobacter phage VB_AB_Acb75, complete genome. 45487, gc%: 38.02%

Download summary as .txt file:summary.txt file_download

Total:1 prophage regions have been identified, of which 0 regions are intact, 0 regions are incomplete, and 1 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
132.9Kbquestionable90309-32981 info_outlinePHAGE_Acinet_AB1_NC_042028(20)37.77%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|PP717790.1| Acinetobacter phage VB_AB_Acb75, complete genome. 45487, gc%: 38.02%

Download details as .txt file:detail.txt file_download

Fiber protein
Hypothetical protein
Plate protein
Phage-like protein
Regulatory protein
Terminase
Head protein

questionable

Region 1, total 30 CDS

#CDS PositionBLAST HitE-ValueSequence
19..2057PP_00001;putative tail-fiber/lysozyme protein;phage;PHAGE_Acinet_IME_AB2_NC_0418570.0Show info_outline
22089..2673PP_00002;hypothetical protein;phage;PHAGE_Acinet_AP22_NC_0179844.16e-138Show info_outline
32758..3099PP_00003;hypothetical protein;phage;PHAGE_Acinet_WCHABP1_NC_0419668.15e-62Show info_outline
43209..4099PP_00004;hypothetical protein;phage;PHAGE_Acinet_IME_AB2_NC_0418570.0Show info_outline
54080..4625PP_00005;putative baseplate assembly protein;phage;PHAGE_Acinet_WCHABP1_NC_0419661.87e-120Show info_outline
64728..5225PP_00006;hypothetical protein;phage;PHAGE_Acinet_AbP2_NC_0419989.7e-83Show info_outline
75222..6406PP_00007;putative baseplate J-like protein;phage;PHAGE_Acinet_AbP2_NC_0419980.0Show info_outline
86620..7246PP_00008;AB1gp78;phage;PHAGE_Acinet_AB1_NC_0420281.78e-150Show info_outline
97368..8213PP_00009;tail fiber protein-like protein;phage;PHAGE_Acinet_IME_AB2_NC_0418570.0Show info_outline
108258..10657PP_00010;tail fiber protein;phage;PHAGE_Acinet_vB_ApiP_P2_NC_0420070.0Show info_outline
1110692..10913PP_00011;hypothetical protein;phage;PHAGE_Acinet_IME_AB2_NC_0418571.99e-47Show info_outline
1213119..13835PP_00012;AB1gp67;phage;PHAGE_Acinet_AB1_NC_0420285.71e-177Show info_outline
1313871..14770PP_00013;AB1gp66;phage;PHAGE_Acinet_AB1_NC_0420280.0Show info_outline
1414946..15281PP_00014;hypothetical protein;phage;PHAGE_Acinet_AbP2_NC_0419981.25e-71Show info_outline
1515769..16560PP_00015;putative transcriptional regulator;phage;PHAGE_Acinet_WCHABP1_NC_0419660.0Show info_outline
1616891..17325PP_00016;AB1gp60;phage;PHAGE_Acinet_AB1_NC_0420283.18e-99Show info_outline
1718147..18857PP_00017;AB1gp56;phage;PHAGE_Acinet_AB1_NC_0420289.38e-147Show info_outline
1819390..20133PP_00018;AB1gp53;phage;PHAGE_Acinet_AB1_NC_0420283.49e-180Show info_outline
1920139..21482PP_00019;AB1gp52;phage;PHAGE_Acinet_AB1_NC_0420280.0Show info_outline
2021618..21965PP_00020;AB1gp51;phage;PHAGE_Acinet_AB1_NC_0420281.68e-53Show info_outline
2121982..22272PP_00021;AB1gp50;phage;PHAGE_Acinet_AB1_NC_0420284.59e-66Show info_outline
2222553..23290PP_00022;AB1gp47;phage;PHAGE_Acinet_AB1_NC_0420287.92e-110Show info_outline
2323388..24026PP_00023;hypothetical protein;phage;PHAGE_Acinet_IME_AB2_NC_0418579.61e-140Show info_outline
2425315..25701PP_00024;AB1gp42;phage;PHAGE_Acinet_AB1_NC_0420281.97e-68Show info_outline
2525843..26088PP_00025;AB1gp41;phage;PHAGE_Acinet_AB1_NC_0420283.57e-54Show info_outline
2626612..26908PP_00026;AB1gp38;phage;PHAGE_Acinet_AB1_NC_0420283.54e-68Show info_outline
2726905..27294PP_00027;AB1gp37;phage;PHAGE_Acinet_AB1_NC_0420285.85e-91Show info_outline
2828355..29773PP_00028;putative phage terminase large subunit;phage;PHAGE_Acinet_IME_AB2_NC_0418570.0Show info_outline
2930704..31213PP_00029;putative phage head portal protein;phage;PHAGE_Acinet_IME_AB2_NC_0418571.25e-110Show info_outline
3032544..32981PP_00030;AB1gp26;phage;PHAGE_Acinet_AB1_NC_0420281.53e-102Show info_outline

gi|00000000|ref|PP717790.1| Acinetobacter phage VB_AB_Acb75, complete genome. 45487, gc%: 38.02%

Download details as .txt file:detail.txt file_download

Hypothetical protein
Non phage-like protein

Bacterial, total 12 CDS

#CDS PositionBLAST HitE-ValueSequence
134049..34402PP_00031; hypothetical protein0.0Showinfo_outline
235421..35687PP_00032; hypothetical protein0.0Showinfo_outline
336112..36939PP_00033; prohead core protein protease0.0Showinfo_outline
437113..37481PP_00034; head maturation protease0.0Showinfo_outline
537596..38102PP_00035; capsid stabilizing protein0.0Showinfo_outline
638184..39176PP_00036; major capsid protein0.0Showinfo_outline
739200..39550PP_00037; hypothetical protein0.0Showinfo_outline
841755..42444PP_00038; hypothetical protein0.0Showinfo_outline
942630..43133PP_00039; head protein0.0Showinfo_outline
1043130..43543PP_00040; cysteine protease0.0Showinfo_outline
1143570..44034PP_00041; tail completion protein0.0Showinfo_outline
1244024..45487PP_00042; tail sheath protein0.0Showinfo_outline

Phage Genes

Bacterial Genes

Phage Regions

GC Skew

GC Content

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Phage Genes

Bacterial Genes

Phage Regions

GC Skew

GC Content

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Click on a region or gene to view details

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