Submission Results

Sequence Name: Not Available

GenBank Accession Number: OU877720.1

Download Results: OU877720.1.PHASTEST.zip

gi|00000000|ref|NC_000000| gi||ref|| Klebsiella pneumoniae isolate 179KP-HG genome assembly, plasmid: 118859, gc%: 49.30%

Download summary as .txt file:summary.txt file_download

Total:2 prophage regions have been identified, of which 1 regions are intact, 1 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
129.7Kbincomplete60281-29774 info_outlinePHAGE_Salmon_SSU5_NC_018843(14)49.22%Show info_outline
259Kbintact1506627379-86402 info_outlinePHAGE_Salmon_SSU5_NC_018843(56)50.00%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|OU877720.1| gi||ref|| Klebsiella pneumoniae isolate 179KP-HG genome assembly, plasmid: 118859, gc%: 49.30%

Download details as .txt file:detail.txt file_download

Replication protein
Phage-like protein
Hypothetical protein
Transposase
Integrase
DNA Helicase
Holin
Fiber protein
Tail protein
Head protein
Portal protein
Terminase
Repressor

incomplete

Region 1, total 29 CDS

#CDS PositionBLAST HitE-ValueSequence
11..1098PP_00001;putative replication protein RepA;phage;-;PHAGE_Salmon_SSU5_NC_0188431.25e-98Show info_outline
21550..1762PP_00002;putative Cre-associated protein;phage;-;PHAGE_Salmon_SSU5_NC_0188431.92e-36Show info_outline
31762..2097PP_00003;hypothetical protein;phage;-;PHAGE_Salmon_SSU5_NC_0188433.68e-46Show info_outline
42094..2273PP_00004;hypothetical protein;phage;-;PHAGE_Salmon_SSU5_NC_0188434.99e-12Show info_outline
52460..2636PP_00005;hypothetical protein;phage;-;PHAGE_Salmon_SSU5_NC_0188435.3e-16Show info_outline
62807..3688PP_00006;putative RecA-like recombinase;phage;-;PHAGE_Salmon_SSU5_NC_0188430.0Show info_outline
73695..4012PP_00007;ISSod1, transposase OrfA;phage;-;PROPHAGE_Shewan_MR-11.13e-09Show info_outline
84009..4887PP_00008;transposase insF;phage;-;PROPHAGE_Escher_CFT0733.19e-68Show info_outline
94890..5189PP_00009;putative RecA-like recombinase;phage;-;PHAGE_Salmon_SSU5_NC_0188433.07e-51Show info_outline
105192..5458PP_00010;hypothetical protein;phage;-;PHAGE_Salmon_SSU5_NC_0188433.33e-49Show info_outline
115458..6402PP_00011;DNA polymerase I;phage;-;PHAGE_Salmon_SSU5_NC_0188430.0Show info_outline
126463..7470PP_00012;hypothetical protein;phage;-;PHAGE_Salmon_SSU5_NC_0188430.0Show info_outline
137590..8021PP_00013;hypothetical protein;phage;-;PHAGE_Salmon_SSU5_NC_0188432.02e-91Show info_outline
148497..8877PP_00015;hypothetical protein;phage;-;PHAGE_Entero_mEp460_NC_0197161.19e-58Show info_outline
159117..9542PP_00016;hypothetical protein;phage;-;PHAGE_Salmon_SSU5_NC_0188436.86e-82Show info_outline
169557..13075PP_00017;DNA polymerase III alpha subunit;phage;-;PHAGE_Salmon_SSU5_NC_0188430.0Show info_outline
1713256..14488PP_00018;putative porphyrin biosynthetic protein;phage;-;PHAGE_Salmon_SSU5_NC_0188430.0Show info_outline
1814585..16870PP_00019;putative porphyrin biosynthetic protein;phage;-;PHAGE_Salmon_SSU5_NC_0188430.0Show info_outline
1917473..17853PP_00021;hypothetical protein;phage;-;PHAGE_Rhizob_RHEph10_NC_0342489.35e-10Show info_outline
2017848..18948PP_00022;bacteriophage integrase protein;phage;-;PHAGE_Phage_Gifsy_1_NC_0103922.67e-23Show info_outline
2119035..20519PP_00023;reverse transcriptase;phage;-;PHAGE_Pseudo_phi3_NC_0309403.13e-36Show info_outline
2221632..22042PP_00025;hypothetical protein;phage;-;PHAGE_Escher_HK639_NC_0161586.24e-17Show info_outline
2322752..23120PP_00027;putative glutaredoxin;phage;-;PHAGE_Pseudo_OBP_NC_0165714.1e-14Show info_outline
2423128..23901PP_00028;PhoH;phage;-;PHAGE_Erwini_PhiEaH1_NC_0236101.02e-118Show info_outline
2527379..27594PP_00031;hypothetical protein;phage;-;PHAGE_Salmon_SSU5_NC_0188435.61e-07Show info_outline
2627591..27806PP_00032;hypothetical protein;phage;-;PHAGE_Salmon_SSU5_NC_0188432.45e-32Show info_outline
2727790..27966PP_00033;hypothetical protein;phage;-;PHAGE_Salmon_SSU5_NC_0188434.93e-23Show info_outline
2827966..29288PP_00034;putative DNA ligase;phage;-;PHAGE_Salmon_SSU5_NC_0188430.0Show info_outline
2929288..29755PP_00035;hypothetical protein;phage;-;PHAGE_Salmon_SSU5_NC_0188432.26e-67Show info_outline

intact

Region 2, total 60 CDS

#CDS PositionBLAST HitE-ValueSequence
129835..30623PP_00036;hypothetical protein;phage;-;PHAGE_Salmon_SSU5_NC_0188431.18e-92Show info_outline
232130..33248PP_00038;putative DNA primase;phage;-;PHAGE_Salmon_SSU5_NC_0188430.0Show info_outline
333667..33984PP_00039;ISSod1, transposase OrfA;phage;-;PROPHAGE_Shewan_MR-11.13e-09Show info_outline
433981..34859PP_00040;transposase insF;phage;-;PROPHAGE_Escher_CFT0733.19e-68Show info_outline
534753..36048PP_00041;putative DNA helicase;phage;-;PHAGE_Salmon_SSU5_NC_0188430.0Show info_outline
636113..36838PP_00042;hypothetical protein;phage;-;PHAGE_Salmon_SSU5_NC_0188431.67e-162Show info_outline
737021..37431PP_00043;hypothetical protein;phage;-;PHAGE_Salmon_SSU5_NC_0188438.66e-28Show info_outline
837424..38191PP_00044;hypothetical protein;phage;-;PHAGE_Salmon_SSU5_NC_0188433.51e-26Show info_outline
938264..38626PP_00045;hypothetical protein;phage;-;PHAGE_Salmon_SSU5_NC_0188435.48e-63Show info_outline
1038626..39291PP_00046;putative ParA family protein;phage;-;PHAGE_Salmon_SSU5_NC_0188431.4e-131Show info_outline
1139531..40052PP_00047;DNA ligase;phage;-;PHAGE_Serrat_2050HW_NC_0486683.53e-10Show info_outline
1240107..40304PP_00048;putative Rz1 protein;phage;-;PHAGE_Salmon_SSU5_NC_0188432.23e-26Show info_outline
1340255..40506PP_00049;hypothetical protein;phage;-;PHAGE_Salmon_SSU5_NC_0188432.95e-34Show info_outline
1440509..41201PP_00050;putative endolysin;phage;-;PHAGE_Salmon_SSU5_NC_0188437.93e-156Show info_outline
1541215..41538PP_00051;putative holin;phage;-;PHAGE_Salmon_SSU5_NC_0188435.91e-70Show info_outline
1641635..43134PP_00052;tail fibers protein;phage;-;PHAGE_Escher_ECA2_NC_0477662.02e-36Show info_outline
1743187..55357PP_00053;putative phage tail protein;phage;-;PHAGE_Salmon_SSU5_NC_0188430.0Show info_outline
1855374..55985PP_00054;putative phage tail protein;phage;-;PHAGE_Salmon_SSU5_NC_0188439.93e-112Show info_outline
1955973..56812PP_00055;putative phage tail protein;phage;-;PHAGE_Salmon_SSU5_NC_0188434.84e-175Show info_outline
2056763..57461PP_00056;putative minor tail protein L;phage;-;PHAGE_Salmon_SSU5_NC_0188434.02e-158Show info_outline
2157548..57883PP_00057;putative minor tail protein M;phage;-;PHAGE_Salmon_SSU5_NC_0188433.76e-67Show info_outline
2257927..60401PP_00058;putative tail tape measure protein;phage;-;PHAGE_Salmon_SSU5_NC_0188430.0Show info_outline
2360408..60725PP_00059;ISSod1, transposase OrfA;phage;-;PROPHAGE_Shewan_MR-11.13e-09Show info_outline
2460722..61600PP_00060;transposase insF;phage;-;PROPHAGE_Escher_CFT0733.19e-68Show info_outline
2561603..63771PP_00061;putative tail tape measure protein;phage;-;PHAGE_Salmon_SSU5_NC_0188430.0Show info_outline
2663779..64012PP_00062;hypothetical protein;phage;-;PHAGE_Salmon_SSU5_NC_0188436.91e-46Show info_outline
2764129..64446PP_00063;hypothetical protein;phage;-;PHAGE_Salmon_SSU5_NC_0188432.75e-64Show info_outline
2864508..65254PP_00064;putative tail protein;phage;-;PHAGE_Rhizob_RHEph10_NC_0342482.06e-24Show info_outline
2965322..65714PP_00065;hypothetical protein;phage;-;PHAGE_Salmon_SSU5_NC_0188433.26e-63Show info_outline
3065716..66189PP_00066;putative head-to-tail joining protein;phage;-;PHAGE_Rhizob_RHEph10_NC_0342481.73e-08Show info_outline
3166180..66524PP_00067;hypothetical protein;phage;-;PHAGE_Salmon_SSU5_NC_0188435.99e-73Show info_outline
3266622..67455PP_00068;hypothetical protein;phage;-;PHAGE_Salmon_SSU5_NC_0188431.41e-176Show info_outline
3367455..67889PP_00069;hypothetical protein;phage;-;PHAGE_Salmon_SSU5_NC_0188432.83e-84Show info_outline
3467937..68365PP_00070;tail assembly protein;phage;-;PHAGE_Salmon_SE4_NC_0487643.42e-22Show info_outline
3568444..69322PP_00071;putative major capsid protein;phage;-;PHAGE_Salmon_SSU5_NC_0188430.0Show info_outline
3669349..69816PP_00072;hypothetical protein;phage;-;PHAGE_Salmon_SSU5_NC_0188439.03e-101Show info_outline
3769864..70742PP_00073;transposase insF;phage;-;PROPHAGE_Escher_CFT0733.19e-68Show info_outline
3870739..71056PP_00074;ISSod1, transposase OrfA;phage;-;PROPHAGE_Shewan_MR-11.13e-09Show info_outline
3971105..71554PP_00075;hypothetical protein;phage;-;PHAGE_Salmon_SSU5_NC_0188434.14e-72Show info_outline
4071577..73151PP_00076;putative phage portal protein;phage;-;PHAGE_Rhizob_RHEph10_NC_0342481.26e-166Show info_outline
4173184..74440PP_00077;putative terminase large subunit;phage;-;PHAGE_Salmon_SSU5_NC_0188430.0Show info_outline
4274443..75105PP_00078;putative DNA-binding protein;phage;-;PHAGE_Salmon_SSU5_NC_0188433.78e-109Show info_outline
4375260..75526PP_00079;hypothetical protein;phage;-;PHAGE_Salmon_SSU5_NC_0188431.29e-41Show info_outline
4475536..76426PP_00080;putative ABC transporter ATP-binding protein;phage;-;PHAGE_Salmon_SSU5_NC_0188430.0Show info_outline
4576432..76686PP_00081;hypothetical protein;phage;-;PHAGE_Salmon_SSU5_NC_0188431.68e-53Show info_outline
4676679..77317PP_00082;putative ABC transporter ATP-binding protein;phage;-;PHAGE_Salmon_SSU5_NC_0188435.69e-151Show info_outline
4777314..77982PP_00083;putative ParB-like nuclease domain-containing protein;phage;-;PHAGE_Salmon_SSU5_NC_0188431.18e-144Show info_outline
4877982..78686PP_00084;putative ParB-like nuclease domain-containing protein;phage;-;PHAGE_Salmon_SSU5_NC_0188432.63e-145Show info_outline
4978746..80305PP_00085;putative helicase;phage;-;PHAGE_Salmon_SSU5_NC_0188430.0Show info_outline
5080308..80583PP_00086;hypothetical protein;phage;-;PHAGE_Salmon_SSU5_NC_0188432.01e-39Show info_outline
5180634..81071PP_00087;hypothetical protein;phage;-;PHAGE_Escher_HK639_NC_0161583.38e-21Show info_outline
5281227..81757PP_00088;putative repressor of phase 1 flagellin;phage;-;PHAGE_Salmon_SSU5_NC_0188432.76e-92Show info_outline
5382391..83041PP_00089;hypothetical protein;phage;-;PHAGE_Salmon_SSU5_NC_0188436.43e-145Show info_outline
5483092..83295PP_00090;putative MIT family metal ion transporter CorA;phage;-;PHAGE_Salmon_SSU5_NC_0188438.67e-39Show info_outline
5583890..84372PP_00091;hypothetical protein;phage;-;PHAGE_Salmon_SSU5_NC_0188439.48e-85Show info_outline
5684577..84774PP_00092;hypothetical protein;phage;-;PHAGE_Salmon_SSU5_NC_0188433.3e-34Show info_outline
5784984..85391PP_00093;Gp62;phage;-;PHAGE_Klebsi_phiKO2_NC_0058574.05e-31Show info_outline
5885511..85822PP_00094;hypothetical protein;phage;-;PHAGE_Salmon_SSU5_NC_0188434.73e-45Show info_outline
5985959..86171PP_00095;hypothetical protein;phage;-;PHAGE_Salmon_SSU5_NC_0188432.63e-32Show info_outline
6086184..86402PP_00096;hypothetical protein;phage;-;PHAGE_Salmon_SSU5_NC_0188437.28e-37Show info_outline

gi|00000000|ref|OU877720.1| gi||ref|| Klebsiella pneumoniae isolate 179KP-HG genome assembly, plasmid: 118859, gc%: 49.30%

Download details as .txt file:detail.txt file_download

Non phage-like protein
Hypothetical protein
phage N-6-adenine-methyltransferase [Nissabacter archeti]

Bacterial, total 28 CDS

#CDS PositionBLAST HitE-ValueSequence
188279..90144PP_00097; DUF262 domain-containing protein [Halomonas lutea]4.651966e-245Showinfo_outline
290348..91904PP_00098; type I restriction-modification system subunit M [Neptuniibacter pectenicola]6.618932e-245Showinfo_outline
391901..93097PP_00099; restriction endonuclease subunit S [Caballeronia fortuita]2.363633e-125Showinfo_outline
493173..96289PP_00100; type I restriction endonuclease subunit R [Moraxella macacae]0.0Showinfo_outline
596351..96566PP_00101; MULTISPECIES: DUF4942 domain-containing protein [Klebsiella]4.294339e-14Showinfo_outline
696695..97273PP_00102; hypothetical protein [Cronobacter sakazakii]4.295251e-40Showinfo_outline
797401..97556PP_00103; MULTISPECIES: DUF3927 family protein [Cronobacter]1.230336e-10Showinfo_outline
897556..97981PP_00104; tellurite resistance TerB family protein [Buttiauxella brennerae]9.690915e-58Showinfo_outline
998282..98821PP_00105; MULTISPECIES: hypothetical protein [Enterobacteriaceae]3.516195e-28Showinfo_outline
1098968..99576PP_00106; MULTISPECIES: ribonuclease HI [Enterobacteriaceae]9.549451e-107Showinfo_outline
11100166..100399PP_00107; MULTISPECIES: hypothetical protein [Enterobacteriaceae]5.5542e-31Showinfo_outline
12100602..101195PP_00108; phage N-6-adenine-methyltransferase [Nissabacter archeti];phage N-6-adenine-methyltransferase [Nissabacter archeti]3.940105e-81Showinfo_outline
13101380..102213PP_00109; MULTISPECIES: hypothetical protein [Escherichia]1.61943e-64Showinfo_outline
14102339..102896PP_00110; MULTISPECIES: 3'-5' exonuclease [Escherichia]2.833066e-81Showinfo_outline
15102906..103325PP_00111; MULTISPECIES: hypothetical protein [Enterobacteriaceae]3.541356e-52Showinfo_outline
16103389..104033PP_00112; MULTISPECIES: AAA family ATPase [Enterobacteriaceae]2.047932e-91Showinfo_outline
17104033..104509PP_00113; MULTISPECIES: dihydrofolate reductase [Enterobacteriaceae]1.054422e-68Showinfo_outline
18104506..104901PP_00114; MULTISPECIES: hypothetical protein [Klebsiella]4.079861e-50Showinfo_outline
19104921..106024PP_00115; MULTISPECIES: thymidylate synthase [Klebsiella]1.878614e-177Showinfo_outline
20106218..107093PP_00116; MULTISPECIES: hypothetical protein [Enterobacteriaceae]2.102784e-139Showinfo_outline
21107171..108313PP_00117; MULTISPECIES: ribonucleotide-diphosphate reductase subunit beta [Enterobacterales]7.82432e-211Showinfo_outline
22108444..110747PP_00118; ribonucleoside-diphosphate reductase subunit alpha [Nissabacter archeti]0.0Showinfo_outline
23110823..111392PP_00119; MULTISPECIES: hypothetical protein [Bacteria]1.13289e-93Showinfo_outline
24111402..112148PP_00120; MULTISPECIES: hypothetical protein [Bacteria]2.156544e-76Showinfo_outline
25112138..114054PP_00121; MULTISPECIES: AAA family ATPase [Enterobacteriaceae]1.084069e-297Showinfo_outline
26114051..114284PP_00122; MULTISPECIES: hypothetical protein [Enterobacteriaceae]2.189193e-19Showinfo_outline
27114284..115369PP_00123; metallophosphoesterase [Yersinia pestis]2.754927e-181Showinfo_outline
28116022..117581PP_00124; MULTISPECIES: DUF4041 domain-containing protein [Yersinia]1.664037e-179Showinfo_outline

Phage Genes

Bacterial Genes

Phage Regions

GC Skew

GC Content

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Phage Genes

Bacterial Genes

Phage Regions

GC Skew

GC Content

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Click on a region or gene to view details

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