Submission Results

Sequence Name: Not Available

GenBank Accession Number: NZ_JBDYSM010000013

Download Results: NZ_JBDYSM010000013.PHASTEST.zip

gi|00000000|ref|NC_000000| Klebsiella aerogenes strain EX978 144272, gc%: 53.97%

Download summary as .txt file:summary.txt file_download

Total:1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
143.9Kbintact1505817952-61929 info_outlinePHAGE_Escher_500465_1_NC_049342(38)53.06%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|NZ_JBDYSM010000013.1| Klebsiella aerogenes strain EX978 144272, gc%: 53.97%

Download details as .txt file:detail.txt file_download

Phage-like protein
Membrane protein
Tail protein
Fiber protein
Plate protein
Lysis protein
Hypothetical protein
Holin
Head protein
Terminase
Portal protein
Endonuclease
Regulatory protein
Repressor
Integrase

intact

Region 1, total 57 CDS

#CDS PositionBLAST HitE-ValueSequence
117952..19316PP_00020;signal recognition particle protein;phage;PHAGE_Escher_500465_1_NC_0493420.0Show info_outline
219483..20274PP_00021;inner membrane protein YpjD;phage;PHAGE_Escher_500465_1_NC_0493421.78e-165Show info_outline
320292..21578PP_00022;HlyC/CorC family transporter;phage;PHAGE_Escher_500465_1_NC_0493420.0Show info_outline
421682..22272PP_00023;heat shock protein;phage;PHAGE_Escher_500465_1_NC_0493422.86e-49Show info_outline
522396..23274PP_00024;DNA repair protein RecN;phage;PHAGE_Escher_500465_1_NC_0493420.0Show info_outline
623361..25022PP_00025;DNA repair protein RecN;phage;PHAGE_Escher_500465_1_NC_0493420.0Show info_outline
725170..25508PP_00026;outer membrane protein assembly factor BamE;phage;PHAGE_Escher_500465_1_NC_0493425.48e-73Show info_outline
825572..25862PP_00027;RnfH family protein;phage;PHAGE_Escher_500465_1_NC_0493422.58e-49Show info_outline
925852..26289PP_00028;type II toxin-antitoxin system toxin RatA;phage;PHAGE_Escher_500465_1_NC_0493421.49e-90Show info_outline
1026443..26925PP_00029;SsrA-binding protein;phage;PHAGE_Klebsi_ST437_OXA245phi4.1_NC_0494489.59e-113Show info_outline
1127613..27831PP_00030;ogr/Delta-like zinc finger family protein;phage;PHAGE_Escher_500465_1_NC_0493421.42e-45Show info_outline
1227897..28997PP_00031;tail protein;phage;PHAGE_Salmon_Fels_2_NC_0104630.0Show info_outline
1328994..29479PP_00032;tail protein;phage;PHAGE_Salmon_RE_2010_NC_0194881.34e-109Show info_outline
1429476..32550PP_00033;tail tape measure protein;phage;PHAGE_Escher_500465_1_NC_0493420.0Show info_outline
1532543..32662PP_00034;GpE familygtail protein;phage;PHAGE_Salmon_SEN8_NC_0477531.46e-19Show info_outline
1632677..32979PP_00035;P2 gpE-like tail protein;phage;PHAGE_Salmon_Fels_2_NC_0104631.56e-61Show info_outline
1733034..33549PP_00036;major tail tube protein;phage;PHAGE_Salmon_Fels_2_NC_0104636.45e-120Show info_outline
1833559..34731PP_00037;major tail sheath protein;phage;PHAGE_Salmon_Fels_2_NC_0104630.0Show info_outline
1934865..35266PP_00038;tail fiber assembly protein;phage;PHAGE_Shigel_SfIV_NC_0227498.65e-27Show info_outline
2035268..36773PP_00039;tail protein;phage;PHAGE_Salmon_SEN8_NC_0477532.24e-121Show info_outline
2136770..37375PP_00040;tail protein I;phage;PHAGE_Salmon_RE_2010_NC_0194883.69e-141Show info_outline
2237368..38276PP_00041;baseplate assembly protein;phage;PHAGE_Klebsi_4LV2017_NC_0478180.0Show info_outline
2338263..38622PP_00042;phage baseplate assembly protein;phage;PROPHAGE_Salmon_Ty24.15e-70Show info_outline
2438619..39197PP_00043;baseplate assembly protein V;phage;PHAGE_Escher_500465_1_NC_0493424.58e-132Show info_outline
2540412..40858PP_00045;virion morphogenesis protein;phage;PHAGE_Klebsi_4LV2017_NC_0478181.19e-90Show info_outline
2640851..41282PP_00046;tail protein;phage;PHAGE_Klebsi_4LV2017_NC_0478185.03e-101Show info_outline
2741245..41493PP_00047;P2 LysC-like protein;phage;PHAGE_Salmon_Fels_2_NC_0104638.44e-38Show info_outline
2841378..41806PP_00048;LysB familyglysis regulatory protein;phage;PHAGE_Klebsi_4LV2017_NC_0478181.11e-94Show info_outline
2941803..42180PP_00049;hypothetical protein;phage;PHAGE_Klebsi_4LV2017_NC_0478182.42e-81Show info_outline
3042182..42694PP_00050;lysozyme;phage;PHAGE_Escher_500465_1_NC_0493422.32e-122Show info_outline
3142675..42890PP_00051;holin;phage;PHAGE_Klebsi_ST437_OXA245phi4.2_NC_0494491.42e-37Show info_outline
3242894..43097PP_00052;tail protein X;phage;PHAGE_Klebsi_4LV2017_NC_0478185.26e-44Show info_outline
3343097..43561PP_00053;head completion/stabilization protein;phage;PHAGE_Klebsi_4LV2017_NC_0478187.91e-112Show info_outline
3443657..44307PP_00054;terminase endonuclease subunit;phage;PHAGE_Klebsi_4LV2017_NC_0478181.06e-154Show info_outline
3544311..45369PP_00055;major capsid protein, P2 family;phage;PHAGE_Klebsi_4LV2017_NC_0478180.0Show info_outline
3645386..46219PP_00056;GPO family capsid scaffolding protein;phage;PHAGE_Klebsi_4LV2017_NC_0478180.0Show info_outline
3746362..48128PP_00057;oxidoreductase;phage;PHAGE_Klebsi_ST437_OXA245phi4.2_NC_0494490.0Show info_outline
3848128..48853PP_00058;terminase-like family protein;phage;PHAGE_Escher_500465_1_NC_0493421.02e-118Show info_outline
3948850..49890PP_00059;portal protein;phage;PHAGE_Klebsi_ST15_OXA48phi14.1_NC_0494540.0Show info_outline
4049925..51358PP_00060;SEFIR domain protein;phage;PHAGE_Klebsi_ST15_OXA48phi14.1_NC_0494540.0Show info_outline
4151574..52416PP_00061;hypothetical protein;phage;PHAGE_Klebsi_ST15_OXA48phi14.1_NC_0494540.0Show info_outline
4252416..52634PP_00062;hypothetical protein;phage;PHAGE_Klebsi_ST15_OXA48phi14.1_NC_0494542.4e-44Show info_outline
4352921..53154PP_00063;DNA damage inducible protein;phage;PHAGE_Klebsi_ST437_OXA245phi4.1_NC_0494489.24e-47Show info_outline
4453166..53354PP_00064;hypothetical protein;phage;PHAGE_Salmon_SEN8_NC_0477531.68e-37Show info_outline
4553517..55910PP_00065;replication endonuclease;phage;PHAGE_Klebsi_ST437_OXA245phi4.1_NC_0494480.0Show info_outline
4655907..56758PP_00066;DNA adenine methylase;phage;PHAGE_Klebsi_ST437_OXA245phi4.1_NC_0494480.0Show info_outline
4756755..56982PP_00067;TraR/DksA transcriptional regulator;phage;PHAGE_Klebsi_ST15_OXA48phi14.1_NC_0494541.83e-31Show info_outline
4856982..57209PP_00068;hypothetical protein;phage;PHAGE_Erwini_EtG_NC_0478331.93e-26Show info_outline
4957277..57618PP_00069;hypothetical protein;phage;PHAGE_Klebsi_ST13_OXA48phi12.1_NC_0494532.38e-67Show info_outline
5057582..57782PP_00070;cell division blocking protein;phage;PHAGE_Salmon_RE_2010_NC_0194881.09e-33Show info_outline
5157790..58299PP_00071;bacteriophage regulatory protein CII;phage;PHAGE_Salmon_Fels_2_NC_0104631.44e-118Show info_outline
5258332..58574PP_00072;Rha family transcriptional regulator;phage;PHAGE_Klebsi_ST15_OXA48phi14.1_NC_0494546.27e-54Show info_outline
5358694..59326PP_00073;repressor protein CI;phage;PHAGE_Salmon_SEN8_NC_0477531.48e-140Show info_outline
5459328..60353PP_00074;site-specific integrase;phage;PHAGE_Salmon_SEN8_NC_0477530.0Show info_outline
5560682..60991PP_00075;integrase-like protein;phage;PROPHAGE_Entero_Fels-21.1e-64Show info_outline
5660948..61259PP_00076;integrase-like protein;phage;PROPHAGE_Entero_Fels-22.11e-30Show info_outline
5761147..61929PP_00077;integrase-like protein;phage;PROPHAGE_Entero_Fels-28.69e-133Show info_outline

gi|00000000|ref|NZ_JBDYSM010000013.1| Klebsiella aerogenes strain EX978 144272, gc%: 53.97%

Download details as .txt file:detail.txt file_download

Non phage-like protein
Hypothetical protein
tRNA

Bacterial, total 106 CDS

#CDS PositionBLAST HitE-ValueSequence
1666..3239PP_00001; ATP-dependent chaperone ClpB0.0Showinfo_outline
23369..4100PP_00002; purine nucleoside phosphorylase YfiH0.0Showinfo_outline
34097..5077PP_00003; 23S rRNA pseudouridine(1911/1915/1917) synthase RluD0.0Showinfo_outline
45209..5946PP_00004; outer membrane protein assembly factor BamD0.0Showinfo_outline
56219..6554PP_00005; ribosome-associated translation inhibitor RaiA0.0Showinfo_outline
66669..6716PP_00006; pheA operon leader peptide PheL0.0Showinfo_outline
76818..7978PP_00007; bifunctional chorismate mutase/prephenate dehydratase0.0Showinfo_outline
87975..8847PP_00008; SMP-30/gluconolactonase/LRE family protein0.0Showinfo_outline
98915..10036PP_00009; bifunctional chorismate mutase/prephenate dehydrogenase0.0Showinfo_outline
1010046..11116PP_00010; 3-deoxy-7-phosphoheptulonate synthase AroF0.0Showinfo_outline
1111460..11969PP_00011; YfiR family protein0.0Showinfo_outline
1211962..13185PP_00012; diguanylate cyclase DgcN0.0Showinfo_outline
1313198..13677PP_00013; OmpA family protein0.0Showinfo_outline
1413683..15053PP_00014; PepSY domain-containing protein0.0Showinfo_outline
1515110..15559PP_00015; DUF2946 domain-containing protein0.0Showinfo_outline
1615680..16027PP_00016; 50S ribosomal protein L190.0Showinfo_outline
1716067..16834PP_00017; tRNA (guanosine(37)-N1)-methyltransferase TrmD0.0Showinfo_outline
1816866..17414PP_00018; ribosome maturation factor RimM0.0Showinfo_outline
1917433..17681PP_00019; 30S ribosomal protein S160.0Showinfo_outline
2061931..62572PP_00078; hypothetical protein0.0Showinfo_outline
2162716..66516PP_00079; hypothetical protein0.0Showinfo_outline
2267048..67263PP_00080; AlpA family transcriptional regulator0.0Showinfo_outline
2367299..69083PP_00081; hypothetical protein0.0Showinfo_outline
2469063..70030PP_00082; hypothetical protein0.0Showinfo_outline
2570274..71143PP_00083; hypothetical protein0.0Showinfo_outline
2671499..72299PP_00084; nucleotidyltransferase domain-containing protein0.0Showinfo_outline
2772439..73011PP_00085; dihydrofolate reductase family protein0.0Showinfo_outline
2873211..73573PP_00086; cupin domain-containing protein0.0Showinfo_outline
2973650..74486PP_00087; AraC family transcriptional regulator0.0Showinfo_outline
3074796..75023PP_00088; DUF1272 domain-containing protein0.0Showinfo_outline
3175209..75454PP_00089; contact-dependent growth inhibition system immunity protein0.0Showinfo_outline
3275536..75859PP_00090; contact-dependent growth inhibition system immunity protein0.0Showinfo_outline
3376047..78566PP_00091; trimethylamine-N-oxide reductase TorA0.0Showinfo_outline
3478576..79739PP_00092; NapC/NirT family cytochrome c0.0Showinfo_outline
3579965..80831PP_00093; c-type cytochrome biogenesis protein CcmI0.0Showinfo_outline
3680828..81295PP_00094; cytochrome c-type biogenesis protein0.0Showinfo_outline
3781292..81849PP_00095; DsbE family thiol:disulfide interchange protein0.0Showinfo_outline
3881849..83801PP_00096; heme lyase CcmF/NrfE family subunit0.0Showinfo_outline
3983798..84274PP_00097; cytochrome c maturation protein CcmE0.0Showinfo_outline
4084271..84495PP_00098; heme exporter protein CcmD0.0Showinfo_outline
4184492..85238PP_00099; heme ABC transporter permease0.0Showinfo_outline
4285272..85931PP_00100; heme exporter protein CcmB0.0Showinfo_outline
4385928..86551PP_00101; cytochrome c biogenesis heme-transporting ATPase CcmA0.0Showinfo_outline
4486736..88118PP_00102; DHA2 family efflux MFS transporter permease subunit0.0Showinfo_outline
4588348..89235PP_00103; LysR family transcriptional regulator0.0Showinfo_outline
4689183..90073PP_00104; MBL fold metallo-hydrolase0.0Showinfo_outline
4790253..91047PP_00105; SDR family NAD(P)-dependent oxidoreductase0.0Showinfo_outline
4891219..91827PP_00106; hypothetical protein0.0Showinfo_outline
4991878..92639PP_00107; transporter substrate-binding domain-containing protein0.0Showinfo_outline
5092650..93435PP_00108; CatB-related O-acetyltransferase0.0Showinfo_outline
5193745..94611PP_00109; MurR/RpiR family transcriptional regulator0.0Showinfo_outline
5294623..95204PP_00110; D-alanyl-D-alanine dipeptidase0.0Showinfo_outline
5395201..96763PP_00111; ABC transporter substrate-binding protein0.0Showinfo_outline
5496824..97843PP_00112; ABC transporter permease0.0Showinfo_outline
5597844..98737PP_00113; D,D-dipeptide ABC transporter permease0.0Showinfo_outline
5698737..99726PP_00114; ABC transporter ATP-binding protein0.0Showinfo_outline
5799719..100663PP_00115; ABC transporter ATP-binding protein0.0Showinfo_outline
58100986..102506PP_00116; aldehyde dehydrogenase family protein0.0Showinfo_outline
59102772..104553PP_00117; sigma-54-dependent Fis family transcriptional regulator0.0Showinfo_outline
60104554..105150PP_00118; undecaprenyl-diphosphatase0.0Showinfo_outline
61105210..106148PP_00119; LysR family transcriptional regulator0.0Showinfo_outline
62106251..106856PP_00120; FMN-dependent NADH-azoreductase0.0Showinfo_outline
63106934..107233PP_00121; helix-turn-helix transcriptional regulator0.0Showinfo_outline
64107243..107764PP_00122; rhodanese family protein0.0Showinfo_outline
65107761..108663PP_00123; lipid A hydroxylase LpxO0.0Showinfo_outline
66108872..109051PP_00124; hypothetical protein0.0Showinfo_outline
67109094..109495PP_00125; DNA-binding protein StpA0.0Showinfo_outline
68110212..110661PP_00126; L-alanine exporter AlaE0.0Showinfo_outline
69110726..111088PP_00127; DUF2002 family protein0.0Showinfo_outline
70111238..111585PP_00128; DUF883 family protein0.0Showinfo_outline
71111662..113020PP_00129; PLP-dependent aminotransferase family protein0.0Showinfo_outline
72113111..113542PP_00130; carboxymuconolactone decarboxylase family protein0.0Showinfo_outline
73113726..113971PP_00131; glutaredoxin-like protein NrdH0.0Showinfo_outline
74113968..114378PP_00132; class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI0.0Showinfo_outline
75114351..116495PP_00133; class 1b ribonucleoside-diphosphate reductase subunit alpha0.0Showinfo_outline
76116506..117468PP_00134; class 1b ribonucleoside-diphosphate reductase subunit beta0.0Showinfo_outline
77117814..119016PP_00135; glycine betaine/L-proline ABC transporter ATP-binding protein ProV0.0Showinfo_outline
78119009..120073PP_00136; glycine betaine/L-proline ABC transporter permease ProW0.0Showinfo_outline
79120088..121083PP_00137; glycine betaine/L-proline ABC transporter substrate-binding protein ProX0.0Showinfo_outline
80121313..121465PP_00138; hypothetical protein0.0Showinfo_outline
81121529..122059PP_00139; transcriptional repressor MprA0.0Showinfo_outline
82122191..123363PP_00140; multidrug efflux MFS transporter periplasmic adaptor subunit EmrA0.0Showinfo_outline
83123379..124917PP_00141; multidrug efflux MFS transporter permease subunit EmrB0.0Showinfo_outline
84125055..126713PP_00142; 2-isopropylmalate synthase0.0Showinfo_outline
85126710..127477PP_00143; helix-turn-helix domain-containing protein0.0Showinfo_outline
86127526..128041PP_00144; S-ribosylhomocysteine lyase0.0Showinfo_outline
87128205..129761PP_00145; glutamate--cysteine ligase0.0Showinfo_outline
88129828..130256PP_00146; YqaA family protein0.0Showinfo_outline
89130253..130819PP_00147; fructose-1-phosphate/6-phosphogluconate phosphatase0.0Showinfo_outline
90130946..131260PP_00148; BON domain-containing protein0.0Showinfo_outline
91131556..131632tRNA-Arg0.0Showinfo_outline
92131811..131887tRNA-Arg0.0Showinfo_outline
93132077..132153tRNA-Arg0.0Showinfo_outline
94132304..132380tRNA-Arg0.0Showinfo_outline
95132385..132477tRNA-Ser0.0Showinfo_outline
96132815..133000PP_00149; carbon storage regulator CsrA0.0Showinfo_outline
97133364..135991PP_00150; alanine--tRNA ligase0.0Showinfo_outline
98136243..136743PP_00151; recombination regulator RecX0.0Showinfo_outline
99136814..137872PP_00152; recombinase RecA0.0Showinfo_outline
100137962..138459PP_00153; nicotinamide-nucleotide amidase0.0Showinfo_outline
101138598..139476PP_00154; metal ABC transporter substrate-binding protein0.0Showinfo_outline
102139484..140347PP_00155; metal ABC transporter permease0.0Showinfo_outline
103140344..141054PP_00156; metal ABC transporter ATP-binding protein0.0Showinfo_outline
104141360..142439PP_00157; lytic murein transglycosylase B0.0Showinfo_outline
105142716..143279PP_00158; PTS glucitol/sorbitol transporter subunit IIC0.0Showinfo_outline
106143276..144247PP_00159; PTS glucitol/sorbitol transporter subunit IIB0.0Showinfo_outline

Phage Genes

Bacterial Genes

Phage Regions

GC Skew

GC Content

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Phage Genes

Bacterial Genes

Phage Regions

GC Skew

GC Content

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Click on a region or gene to view details

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