Submission Results

Sequence Name: Not Available

GenBank Accession Number: NC_049919.1

Download Results: NC_049919.1.PHASTEST.zip

gi|00000000|ref|NC_000000| Escherichia phage SH2026Stx1, complete genome. 61564, gc%: 49.39%

Download summary as .txt file:summary.txt file_download

Total:1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
161.2Kbintact15079220-61442 info_outlinePHAGE_Escher_SH2026Stx1_NC_049919(77)49.47%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|NC_049919.1| Escherichia phage SH2026Stx1, complete genome. 61564, gc%: 49.39%

Download details as .txt file:detail.txt file_download

Integrase
Phage-like protein
Hypothetical protein
Exonuclease
Inhibitor protein
Regulatory protein
Transposase
Repressor
Replication protein
DNA Helicase
Endonuclease
Lysis protein
Membrane protein
Terminase
Portal protein
Head protein
Fiber protein

intact

Region 1, total 79 CDS

#CDS PositionBLAST HitE-ValueSequence
1220..1389PP_00001;integrase;phage;PHAGE_Escher_SH2026Stx1_NC_0499190.0Show info_outline
21373..1555PP_00002;excisionase;phage;PHAGE_Escher_SH2026Stx1_NC_0499191.4e-38Show info_outline
31616..1867PP_00003;hypothetical protein;phage;PHAGE_Escher_SH2026Stx1_NC_0499191.11e-55Show info_outline
42086..3264PP_00004;hypothetical protein;phage;PHAGE_Escher_SH2026Stx1_NC_0499190.0Show info_outline
53261..3482PP_00005;hypothetical protein;phage;PHAGE_Escher_SH2026Stx1_NC_0499195.31e-47Show info_outline
63581..3862PP_00006;hypothetical protein;phage;PHAGE_Escher_SH2026Stx1_NC_0499192.62e-65Show info_outline
73873..4064PP_00007;hypothetical protein;phage;PHAGE_Escher_SH2026Stx1_NC_0499193.67e-39Show info_outline
84037..4219PP_00008;hypothetical protein;phage;PHAGE_Escher_SH2026Stx1_NC_0499191.47e-38Show info_outline
94216..4896PP_00009;exonuclease;phage;PHAGE_Escher_SH2026Stx1_NC_0499198.9e-171Show info_outline
104893..5678PP_00010;recombination protein Bet;phage;PHAGE_Escher_SH2026Stx1_NC_0499190.0Show info_outline
115684..5980PP_00011;host-nuclease inhibitor protein Gam;phage;PHAGE_Stx2_c_Stx2a_F451_NC_0499245.78e-67Show info_outline
126056..6199PP_00012;putative host killing protein Kil;phage;PHAGE_Stx2_c_86_NC_0084649.79e-28Show info_outline
136168..6332PP_00013;regulatory protein CIII;phage;PHAGE_Stx2_c_Stx2a_WGPS9_NC_0499237.32e-34Show info_outline
146551..8089PP_00014;transposase;phage;PHAGE_Escher_SH2026Stx1_NC_0499190.0Show info_outline
158139..8486PP_00015;transposase;phage;PHAGE_Escher_SH2026Stx1_NC_0499191.72e-78Show info_outline
168483..8863PP_00016;truncated transposase;phage;PHAGE_Stx2_c_1717_NC_0113576.47e-88Show info_outline
179004..9627PP_00017;hypothetical protein;phage;PHAGE_Escher_SH2026Stx1_NC_0499191.8e-150Show info_outline
189639..9980PP_00018;putative regulatory protein N;phage;PHAGE_Escher_SH2026Stx1_NC_0499193.99e-77Show info_outline
1910428..10562PP_00019;hypothetical protein;phage;PHAGE_Escher_SH2026Stx1_NC_0499193.87e-26Show info_outline
2010736..11269PP_00020;hypothetical protein;phage;PHAGE_Escher_SH2026Stx1_NC_0499199.45e-126Show info_outline
2111459..11800PP_00021;hypothetical protein;phage;PHAGE_Escher_SH2026Stx1_NC_0499192.87e-81Show info_outline
2211838..12407PP_00022;repressor protein CI;phage;PHAGE_Escher_SH2026Stx1_NC_0499193.49e-137Show info_outline
2312657..12881PP_00023;Cro;phage;PHAGE_Escher_SH2026Stx1_NC_0499192.5e-48Show info_outline
2412988..13284PP_00024;regulatory protein CII;phage;PHAGE_Escher_SH2026Stx1_NC_0499192.07e-67Show info_outline
2513317..13478PP_00025;hypothetical protein;phage;PHAGE_Escher_SH2026Stx1_NC_0499192.65e-31Show info_outline
2613465..14286PP_00026;DNA replication protein O;phage;PHAGE_Escher_SH2026Stx1_NC_0499190.0Show info_outline
2714283..15659PP_00027;helicase;phage;PHAGE_Escher_SH2026Stx1_NC_0499190.0Show info_outline
2815656..15760PP_00028;hypothetical protein;phage;PHAGE_Escher_SH2026Stx1_NC_0499198.91e-15Show info_outline
2915738..16349PP_00029;putative HNH endonuclease;phage;PHAGE_Escher_SH2026Stx1_NC_0499191.35e-147Show info_outline
3016596..16811PP_00030;hypothetical protein;phage;PHAGE_Escher_SH2026Stx1_NC_0499191.27e-47Show info_outline
3116813..17145PP_00031;hypothetical protein;phage;PHAGE_Escher_SH2026Stx1_NC_0499198.86e-76Show info_outline
3217278..17493PP_00032;hypothetical protein;phage;PHAGE_Escher_SH2026Stx1_NC_0499196.44e-44Show info_outline
3317504..17740PP_00033;hypothetical protein;phage;PHAGE_Escher_SH2026Stx1_NC_0499191.56e-51Show info_outline
3417697..18143PP_00034;NinB protein;phage;PHAGE_Escher_SH2026Stx1_NC_0499191.19e-105Show info_outline
3518140..18667PP_00035;DNA N-6-adenine-methyltransferase (Dam);phage;PHAGE_Entero_mEp213_NC_0197203.0e-128Show info_outline
3619350..21122PP_00036;hypothetical protein;phage;PHAGE_Escher_SH2026Stx1_NC_0499190.0Show info_outline
3721631..21747PP_00037;hypothetical protein;phage;PHAGE_Escher_SH2026Stx1_NC_0499192.05e-21Show info_outline
3821740..22306PP_00038;putative HNH endonuclease;phage;PHAGE_Escher_SH2026Stx1_NC_0499191.09e-139Show info_outline
3922281..22892PP_00039;NinG protein;phage;PHAGE_Escher_SH2026Stx1_NC_0499196.71e-148Show info_outline
4022889..23083PP_00040;putative NinH protein;phage;PHAGE_Escher_ArgO145_NC_0499185.76e-42Show info_outline
4123028..23510PP_00041;hypothetical protein;phage;PHAGE_Escher_SH2026Stx1_NC_0499194.39e-117Show info_outline
4224017..24964PP_00042;Shiga toxin 1 subunit A;phage;PHAGE_Escher_SH2026Stx1_NC_0499190.0Show info_outline
4324974..25243PP_00043;Shiga toxin 1 subunit B;phage;PHAGE_Escher_SH2026Stx1_NC_0499191.98e-60Show info_outline
4425385..25621PP_00044;hypothetical protein;phage;PHAGE_Escher_SH2026Stx1_NC_0499192.13e-53Show info_outline
4525747..27687PP_00045;hypothetical protein;phage;PHAGE_Escher_SH2026Stx1_NC_0499190.0Show info_outline
4627824..28003PP_00046;hypothetical protein;phage;PHAGE_Escher_ArgO145_NC_0499184.92e-38Show info_outline
4728044..28316PP_00047;hypothetical protein;phage;PHAGE_Escher_SH2026Stx1_NC_0499191.9e-56Show info_outline
4828393..28608PP_00048;holin lysis protein S;phage;PHAGE_Shigel_Ss_VASD_NC_0286851.68e-45Show info_outline
4928613..29146PP_00049;lysozyme;phage;PHAGE_Escher_SH2026Stx1_NC_0499192.36e-128Show info_outline
5029461..30003PP_00050;anti-repressor protein Ant;phage;PHAGE_Escher_SH2026Stx1_NC_0499199.63e-133Show info_outline
5130018..30152PP_00051;hypothetical protein;phage;PHAGE_Escher_SH2026Stx1_NC_0499198.62e-22Show info_outline
5230160..30624PP_00052;Rz lysis protein;phage;PHAGE_Escher_SH2026Stx1_NC_0499191.27e-108Show info_outline
5330380..30565PP_00053;outer membrane lipoprotein Rz1;phage;PHAGE_Escher_SH2026Stx1_NC_0499193.59e-37Show info_outline
5430656..30949PP_00054;putative lipoprotein Bor;phage;PHAGE_Escher_ArgO145_NC_0499185.14e-65Show info_outline
5531358..32164PP_00055;terminase small subunit;phage;PHAGE_Escher_SH2026Stx1_NC_0499190.0Show info_outline
5632145..33851PP_00056;large subunit terminase;phage;PHAGE_Escher_SH2026Stx1_NC_0499190.0Show info_outline
5733851..35995PP_00057;portal protein;phage;PHAGE_Escher_Lys12581Vzw_NC_0499170.0Show info_outline
5836153..37160PP_00058;hypothetical protein;phage;PHAGE_Escher_ArgO145_NC_0499180.0Show info_outline
5937184..38398PP_00059;putative major capsid protein;phage;PHAGE_Escher_ArgO145_NC_0499180.0Show info_outline
6038454..38843PP_00060;hypothetical protein;phage;PHAGE_Escher_ArgO145_NC_0499181.93e-87Show info_outline
6138893..39354PP_00061;hypothetical protein;phage;PHAGE_Escher_SH2026Stx1_NC_0499197.26e-109Show info_outline
6239338..39901PP_00062;hypothetical protein;phage;PHAGE_Entero_933W_NC_0009242.75e-136Show info_outline
6339901..40551PP_00063;hypothetical protein;phage;PHAGE_Escher_ArgO145_NC_0499181.3e-157Show info_outline
6440548..42443PP_00064;putative tail fiber protein;phage;PHAGE_Escher_SH2026Stx1_NC_0499190.0Show info_outline
6542445..42714PP_00065;putative tail fiber protein;phage;PHAGE_Escher_ArgO145_NC_0499181.88e-55Show info_outline
6642799..43995PP_00066;transposase;phage;PROPHAGE_Escher_CFT0730.0Show info_outline
6744307..44495PP_00067;hypothetical protein;phage;PHAGE_Escher_SH2026Stx1_NC_0499195.24e-40Show info_outline
6844790..46415PP_00068;hypothetical protein;phage;PHAGE_Entero_933W_NC_0009240.0Show info_outline
6946412..47680PP_00069;putative tail fiber protein;phage;PHAGE_Escher_ArgO145_NC_0499180.0Show info_outline
7047695..47973PP_00070;putative outer membrane protein;phage;PHAGE_Escher_ArgO145_NC_0499181.64e-63Show info_outline
7147979..48596PP_00071;hypothetical protein;phage;PHAGE_Escher_SH2026Stx1_NC_0499192.59e-152Show info_outline
7248687..49421PP_00072;Lom;phage;PHAGE_Escher_SH2026Stx1_NC_0499190.0Show info_outline
7349654..49794PP_00073;hypothetical protein;phage;PHAGE_Escher_ArgO145_NC_0499188.59e-27Show info_outline
7449851..50252PP_00074;hypothetical protein;phage;PHAGE_Escher_ArgO145_NC_0499181.99e-95Show info_outline
7550346..51002PP_00075;hypothetical protein;phage;PHAGE_Escher_ArgO145_NC_0499183.28e-155Show info_outline
7651005..51451PP_00076;hypothetical protein;phage;PHAGE_Escher_ArgO145_NC_0499182.11e-102Show info_outline
7751461..51712PP_00077;hypothetical protein;phage;PHAGE_Escher_SH2026Stx1_NC_0499197.11e-51Show info_outline
7851723..52988PP_00078;hypothetical protein;phage;PHAGE_Escher_SH2026Stx1_NC_0499190.0Show info_outline
7953058..61442PP_00079;hypothetical protein;phage;PHAGE_Escher_SH2026Stx1_NC_0499190.0Show info_outline

gi|00000000|ref|NC_049919.1| Escherichia phage SH2026Stx1, complete genome. 61564, gc%: 49.39%

Download details as .txt file:detail.txt file_download

Bacterial, total 0 CDS

#CDS PositionBLAST HitE-ValueSequence

Phage Genes

Bacterial Genes

Phage Regions

GC Skew

GC Content

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Phage Genes

Bacterial Genes

Phage Regions

GC Skew

GC Content

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Click on a region or gene to view details

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