Submission Results

Sequence Name: Not Available

GenBank Accession Number: NC_049478

Download Results: NC_049478.PHASTEST.zip

gi|00000000|ref|NC_000000| Arthrobacter phage Mufasa8, complete genome. 60205, gc%: 66.14%

Download summary as .txt file:summary.txt file_download

Total:1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
160.1Kbintact1501041-60118 info_outlinePHAGE_Arthro_Mufasa8_NC_049478(104)66.16%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|NC_049478.1| Arthrobacter phage Mufasa8, complete genome. 60205, gc%: 66.14%

Download details as .txt file:detail.txt file_download

Phage-like protein
Terminase
Portal protein
Head protein
Hypothetical protein
Tail protein
Holin
Lysis protein
Protease
Integrase
Replication protein
Membrane protein

intact

Region 1, total 104 CDS

#CDS PositionBLAST HitE-ValueSequence
11..543PP_00001;helix-turn-helix DNA binding domain protein;phage;PHAGE_Arthro_Mufasa8_NC_0494784.64e-125Show info_outline
2651..2123PP_00002;terminase;phage;PHAGE_Arthro_Mufasa8_NC_0494780.0Show info_outline
32134..5136PP_00003;portal protein;phage;PHAGE_Arthro_Mufasa8_NC_0494780.0Show info_outline
45129..5509PP_00004;capsid maturation protease;phage;PHAGE_Arthro_Mufasa8_NC_0494783.08e-88Show info_outline
55506..6795PP_00005;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494780.0Show info_outline
66834..8300PP_00006;major capsid protein;phage;PHAGE_Arthro_Mufasa8_NC_0494780.0Show info_outline
78348..8797PP_00007;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494781.49e-95Show info_outline
88813..9682PP_00008;head-to-tail adaptor;phage;PHAGE_Arthro_Mufasa8_NC_0494780.0Show info_outline
99682..10173PP_00009;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494784.63e-116Show info_outline
1010173..10646PP_00010;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494782.26e-99Show info_outline
1110659..11003PP_00011;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494781.44e-77Show info_outline
1211003..11992PP_00012;major tail protein;phage;PHAGE_Arthro_Mufasa8_NC_0494780.0Show info_outline
1312047..12547PP_00013;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494786.68e-116Show info_outline
1412601..12747PP_00014;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494781.61e-27Show info_outline
1512758..13231PP_00015;minor capsid protein;phage;PHAGE_Arthro_Mufasa8_NC_0494789.65e-113Show info_outline
1613250..16582PP_00016;tapemeasure protein;phage;PHAGE_Arthro_Mufasa8_NC_0494780.0Show info_outline
1716607..18811PP_00017;minor tail protein;phage;PHAGE_Arthro_Mufasa8_NC_0494780.0Show info_outline
1818827..19933PP_00018;minor tail protein;phage;PHAGE_Arthro_Mufasa8_NC_0494780.0Show info_outline
1919943..21001PP_00019;minor tail protein;phage;PHAGE_Arthro_Mufasa8_NC_0494780.0Show info_outline
2020998..21522PP_00020;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494781.11e-100Show info_outline
2121587..22471PP_00021;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494780.0Show info_outline
2222471..22941PP_00022;holin;phage;PHAGE_Arthro_Laroye_NC_0419471.28e-61Show info_outline
2322952..23569PP_00023;lysin A;phage;PHAGE_Arthro_Mufasa8_NC_0494784.5e-151Show info_outline
2423581..23964PP_00024;major tail protein;phage;PHAGE_Arthro_Tank_NC_0419618.63e-07Show info_outline
2523961..24362PP_00025;holin;phage;PHAGE_Microb_Krampus_NC_0479861.84e-13Show info_outline
2624359..25003PP_00026;cysteine protease;phage;PHAGE_Arthro_Mufasa8_NC_0494781.66e-158Show info_outline
2725316..26536PP_00027;tyrosine integrase;phage;PHAGE_Arthro_Mufasa8_NC_0494780.0Show info_outline
2826533..26820PP_00028;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494781.46e-67Show info_outline
2926823..27032PP_00029;excise;phage;PHAGE_Arthro_Mufasa8_NC_0494782.51e-45Show info_outline
3027035..27355PP_00030;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494784.39e-72Show info_outline
3127368..27754PP_00031;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494781.57e-89Show info_outline
3227818..28225PP_00032;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494784.37e-96Show info_outline
3328278..28640PP_00033;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494782.16e-85Show info_outline
3428703..28999PP_00034;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494781.02e-65Show info_outline
3529103..29933PP_00035;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494780.0Show info_outline
3629988..30341PP_00036;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494781.42e-82Show info_outline
3730435..30860PP_00037;peptidase;phage;PHAGE_Arthro_Mufasa8_NC_0494789.27e-103Show info_outline
3830896..31447PP_00038;helix-turn-helix DNA binding domain protein;phage;PHAGE_Arthro_Mufasa8_NC_0494783.64e-130Show info_outline
3931713..31874PP_00039;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494781.55e-30Show info_outline
4031868..32149PP_00040;excise;phage;PHAGE_Arthro_Mufasa8_NC_0494781.95e-60Show info_outline
4132226..32579PP_00041;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494786.06e-81Show info_outline
4232582..33799PP_00042;DNA repair protein;phage;PHAGE_Arthro_Mufasa8_NC_0494780.0Show info_outline
4333796..34062PP_00043;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494786.53e-60Show info_outline
4434062..34196PP_00044;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494786.59e-23Show info_outline
4534193..34306PP_00045;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494783.56e-18Show info_outline
4634303..35181PP_00046;exonuclease;phage;PHAGE_Rhodoc_Sleepyhead_NC_0487829.54e-16Show info_outline
4735178..36302PP_00047;RecT-like ssDNA binding protein;phage;PHAGE_Arthro_Mufasa8_NC_0494780.0Show info_outline
4836302..36853PP_00048;ssDNA binding protein;phage;PHAGE_Arthro_Mufasa8_NC_0494784.2e-127Show info_outline
4936868..37356PP_00049;RepA-like replication initiator;phage;PHAGE_Arthro_Mufasa8_NC_0494786.15e-114Show info_outline
5037329..37637PP_00050;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494782.15e-63Show info_outline
5137731..38246PP_00051;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494784.09e-122Show info_outline
5238182..38802PP_00052;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494785.92e-139Show info_outline
5338883..39419PP_00053;RusA-like resolvase;phage;PHAGE_Arthro_Mufasa8_NC_0494784.32e-127Show info_outline
5439419..39643PP_00054;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494783.04e-48Show info_outline
5539651..40121PP_00055;helix-turn-helix DNA binding protein;phage;PHAGE_Arthro_Mufasa8_NC_0494784.24e-108Show info_outline
5640191..40622PP_00056;RNA binding protein;phage;PHAGE_Arthro_Mufasa8_NC_0494782.09e-103Show info_outline
5740688..40951PP_00057;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494782.18e-56Show info_outline
5841034..41228PP_00058;HicA-like antitoxin;phage;PHAGE_Arthro_Mufasa8_NC_0494788.72e-41Show info_outline
5941284..41514PP_00059;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494781.45e-47Show info_outline
6041552..41749PP_00060;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494789.63e-41Show info_outline
6141760..42086PP_00061;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494788.02e-74Show info_outline
6242096..42503PP_00062;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494783.96e-96Show info_outline
6342500..42694PP_00063;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494788.38e-39Show info_outline
6442687..43004PP_00064;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494784.92e-72Show info_outline
6543001..43279PP_00065;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494785.05e-63Show info_outline
6643282..43470PP_00066;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494781.21e-38Show info_outline
6743497..43937PP_00067;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494783.32e-106Show info_outline
6843934..44572PP_00068;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494786.78e-155Show info_outline
6944569..44952PP_00069;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494789.93e-92Show info_outline
7044952..45344PP_00070;helix-turn-helix DNA binding domain protein;phage;PHAGE_Arthro_Mufasa8_NC_0494781.9e-90Show info_outline
7145450..45875PP_00071;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494781.23e-102Show info_outline
7245872..46246PP_00072;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494786.9e-87Show info_outline
7346236..46742PP_00073;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494783.89e-122Show info_outline
7446739..46978PP_00074;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494784.7e-54Show info_outline
7546975..47244PP_00075;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494781.78e-61Show info_outline
7647313..47516PP_00076;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494782.61e-42Show info_outline
7747567..48076PP_00077;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494787.21e-123Show info_outline
7848073..48495PP_00078;membrane protein;phage;PHAGE_Arthro_Mufasa8_NC_0494785.57e-92Show info_outline
7948492..48818PP_00079;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494781.46e-74Show info_outline
8048815..49048PP_00080;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494783.02e-49Show info_outline
8149045..49257PP_00081;membrane protein;phage;PHAGE_Arthro_Mufasa8_NC_0494789.48e-40Show info_outline
8249257..49487PP_00082;membrane protein;phage;PHAGE_Arthro_Mufasa8_NC_0494785.22e-45Show info_outline
8349484..49882PP_00083;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494784.5e-92Show info_outline
8449879..50406PP_00084;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494783.03e-124Show info_outline
8550444..51298PP_00085;helix-turn-helix DNA binding domain protein;phage;PHAGE_Arthro_Mufasa8_NC_0494780.0Show info_outline
8651295..51552PP_00086;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494783.11e-57Show info_outline
8751549..51818PP_00087;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494782.15e-59Show info_outline
8851843..51974PP_00088;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494789.68e-23Show info_outline
8952114..52242PP_00089;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494781.1e-20Show info_outline
9052239..53072PP_00090;queuine tRNA-ribosyltransferase;phage;PHAGE_Arthro_Mufasa8_NC_0494780.0Show info_outline
9153065..53769PP_00091;ParB-like nuclease domain protein;phage;PHAGE_Arthro_Mufasa8_NC_0494785.37e-169Show info_outline
9253807..54214PP_00092;GTP cyclohydrolase I;phage;PHAGE_Arthro_Mufasa8_NC_0494782.25e-96Show info_outline
9354254..54925PP_00093;QueC-like queosine biosynthesis protein;phage;PHAGE_Arthro_Mufasa8_NC_0494781.68e-163Show info_outline
9454922..55320PP_00094;QueD-like queosine biosynthesis protein;phage;PHAGE_Arthro_Mufasa8_NC_0494789.0e-95Show info_outline
9555317..56060PP_00095;lipoyl synthase;phage;PHAGE_Arthro_Mufasa8_NC_0494780.0Show info_outline
9656060..56674PP_00096;GTP cyclohydrolase I;phage;PHAGE_Arthro_Mufasa8_NC_0494784.21e-149Show info_outline
9756684..56842PP_00097;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494783.75e-30Show info_outline
9856944..57231PP_00098;helix-turn-helix DNA binding protein;phage;PHAGE_Arthro_Mufasa8_NC_0494782.12e-63Show info_outline
9957228..57992PP_00099;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494780.0Show info_outline
10058061..59050PP_00100;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494780.0Show info_outline
10159142..59363PP_00101;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494785.55e-49Show info_outline
10259437..59634PP_00102;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494782.87e-42Show info_outline
10359634..59795PP_00103;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494783.53e-32Show info_outline
10459825..60118PP_00104;hypothetical protein;phage;PHAGE_Arthro_Mufasa8_NC_0494785.55e-65Show info_outline

gi|00000000|ref|NC_049478.1| Arthrobacter phage Mufasa8, complete genome. 60205, gc%: 66.14%

Download details as .txt file:detail.txt file_download

Bacterial, total 0 CDS

#CDS PositionBLAST HitE-ValueSequence

Phage Genes

Bacterial Genes

Phage Regions

GC Skew

GC Content

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Phage Genes

Bacterial Genes

Phage Regions

GC Skew

GC Content

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Click on a region or gene to view details

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