Submission Results

Sequence Name: Not Available

GenBank Accession Number: NC_049343.1

Download Results: NC_049343.1.PHASTEST.zip

gi|00000000|ref|NC_000000| Escherichia phage 500465-2, complete genome. 33041, gc%: 52.44%

Download summary as .txt file:summary.txt file_download

Total:1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
132.3Kbintact15045584-32936 info_outlinePHAGE_Escher_500465_2_NC_049343(45)52.52%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|NC_049343.1| Escherichia phage 500465-2, complete genome. 33041, gc%: 52.44%

Download details as .txt file:detail.txt file_download

Portal protein
Head protein
Terminase
Phage-like protein
Tail protein
Holin
Plate protein
Fiber protein
Hypothetical protein
Regulatory protein
Transposase

intact

Region 1, total 45 CDS

#CDS PositionBLAST HitE-ValueSequence
1584..862PP_00001;portal protein;phage;PHAGE_Escher_500465_2_NC_0493431.83e-63Show info_outline
2911..1267PP_00002;presumed portal vertex protein;phage;PHAGE_Escher_500465_2_NC_0493431.47e-85Show info_outline
31293..1628PP_00003;capsid portal protein;phage;PHAGE_Escher_500465_2_NC_0493434.89e-78Show info_outline
41628..1972PP_00004;terminase;phage;PHAGE_Escher_500465_2_NC_0493431.26e-79Show info_outline
51969..2751PP_00005;Terminase, ATPase subunit (GpP);phage;PHAGE_Escher_500465_2_NC_0493430.0Show info_outline
62742..3377PP_00006;helix-turn-helix domain-containing protein;phage;PHAGE_Escher_500465_2_NC_0493435.16e-155Show info_outline
73498..3671PP_00007;capsid scaffolding protein GpO;phage;PHAGE_Escher_500465_2_NC_0493439.06e-35Show info_outline
83718..4365PP_00008;GPO family capsid scaffolding protein;phage;PHAGE_Escher_500465_2_NC_0493431.93e-156Show info_outline
94389..5441PP_00009;major capsid protein, P2 family;phage;PHAGE_Escher_500465_2_NC_0493430.0Show info_outline
105487..6287PP_00010;Small terminase subunit;phage;PHAGE_Escher_500465_2_NC_0493430.0Show info_outline
116389..6883PP_00011;head completion/stabilization protein;phage;PHAGE_Escher_500465_2_NC_0493436.03e-115Show info_outline
126883..7137PP_00012;tail protein X;phage;PHAGE_Escher_500465_2_NC_0493431.13e-58Show info_outline
137151..7408PP_00013;holin family protein;phage;PHAGE_Escher_500465_2_NC_0493431.33e-54Show info_outline
147405..7797PP_00014;M15 family metallopeptidase;phage;PHAGE_Escher_503458_NC_0493417.79e-94Show info_outline
157794..8201PP_00015;DUF2570 domain-containing protein;phage;PHAGE_Escher_500465_2_NC_0493437.17e-95Show info_outline
168339..8806PP_00016;tail protein;phage;PHAGE_Escher_500465_2_NC_0493431.06e-112Show info_outline
178799..9434PP_00017;virion morphogenesis protein;phage;PHAGE_Escher_500465_2_NC_0493439.89e-152Show info_outline
189431..10012PP_00018;baseplate assembly protein V;phage;PHAGE_Escher_500465_2_NC_0493437.91e-139Show info_outline
1910009..10359PP_00019;lysozyme family baseplate assembly protein;phage;PHAGE_Entero_P88_NC_0260142.28e-80Show info_outline
2010363..11259PP_00020;baseplate J/gp47 family protein;phage;PHAGE_Escher_500465_2_NC_0493430.0Show info_outline
2111252..11860PP_00021;tail protein I;phage;PHAGE_Escher_500465_2_NC_0493431.66e-148Show info_outline
2211857..13362PP_00022;tail protein;phage;PHAGE_Escher_500465_2_NC_0493430.0Show info_outline
2313362..13955PP_00023;tail fiber assembly protein;phage;PHAGE_Escher_500465_2_NC_0493436.21e-145Show info_outline
2413927..14367PP_00024;tail fiber assembly protein;phage;PHAGE_Escher_500465_2_NC_0493431.24e-102Show info_outline
2514370..14768PP_00025;tail protein;phage;PHAGE_Escher_500465_2_NC_0493432.0e-93Show info_outline
2614796..15383PP_00026;recombinase family protein;phage;PHAGE_Escher_500465_2_NC_0493439.47e-142Show info_outline
2715419..15913PP_00027;tail protein;phage;PHAGE_Escher_500465_2_NC_0493431.29e-119Show info_outline
2815920..18727PP_00028;tail tape measure protein;phage;PHAGE_Escher_500465_2_NC_0493430.0Show info_outline
2918714..18869PP_00029;GpE family tail protein;phage;PHAGE_Escher_500465_2_NC_0493435.28e-31Show info_outline
3018878..19243PP_00030;tail protein;phage;PHAGE_Escher_500465_2_NC_0493431.12e-82Show info_outline
3119298..19810PP_00031;major tail tube protein;phage;PHAGE_Escher_500465_2_NC_0493433.35e-120Show info_outline
3219810..20994PP_00032;tail sheath family protein;phage;PHAGE_Escher_500465_2_NC_0493430.0Show info_outline
3321020..22261PP_00033;bacterioP2 gpD protein;phage;PHAGE_Escher_500465_2_NC_0493430.0Show info_outline
3422382..23404PP_00034;hypothetical protein;phage;PHAGE_Escher_500465_2_NC_0493430.0Show info_outline
3523596..23856PP_00035;ogr/Delta-like zinc finger family protein;phage;PHAGE_Escher_500465_2_NC_0493435.2e-60Show info_outline
3624047..24187PP_00036;Hok/Gef family protein;phage;PHAGE_Escher_500465_2_NC_0493432.18e-26Show info_outline
3724449..24781PP_00037;zinc ribbon domain-containing protein;phage;PHAGE_Escher_500465_2_NC_0493431.53e-72Show info_outline
3824786..25679PP_00038;type VI secretion protein;phage;PHAGE_Escher_500465_2_NC_0493430.0Show info_outline
3925946..26941PP_00039;flagella biosynthesis regulator Flk;phage;PHAGE_Escher_500465_2_NC_0493430.0Show info_outline
4026938..28116PP_00040;MFS transporter;phage;PHAGE_Escher_500465_2_NC_0493430.0Show info_outline
4128400..29620PP_00041;beta-ketoacyl-ACP synthase I;phage;PHAGE_Escher_500465_2_NC_0493430.0Show info_outline
4229719..31284PP_00042;bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC;phage;PHAGE_Escher_500465_2_NC_0493430.0Show info_outline
4331271..31405PP_00043;5-methylaminomethyl-2-thiouridine methyltransferase;phage;PHAGE_Escher_500465_2_NC_0493434.72e-23Show info_outline
4431402..31785PP_00044;peptidase;phage;PHAGE_Escher_500465_2_NC_0493432.69e-89Show info_outline
4531956..32936PP_00045;IS110-like element IS621 family transposase;phage;PHAGE_Escher_500465_2_NC_0493430.0Show info_outline

gi|00000000|ref|NC_049343.1| Escherichia phage 500465-2, complete genome. 33041, gc%: 52.44%

Download details as .txt file:detail.txt file_download

Bacterial, total 0 CDS

#CDS PositionBLAST HitE-ValueSequence

Phage Genes

Bacterial Genes

Phage Regions

GC Skew

GC Content

lock_open

Phage Genes

Bacterial Genes

Phage Regions

GC Skew

GC Content

lock_open
Click on a region or gene to view details

We require the use of cookies for essential features like storing your previously submitted PHASTEST queries. Rejecting the usage of cookies will result in certain features being disabled. By clicking ACCEPT or continuing to use the website you are agreeing to our use of cookies.

ACCEPT