Submission Results

Sequence Name: Not Available

GenBank Accession Number: NC_038017

Download Results: NC_038017.PHASTEST.zip

gi|00000000|ref|NC_000000| Sulfolobus polyhedral virus 1 isolate S14, complete genome. 20222, gc%: 38.34%

Download summary as .txt file:summary.txt file_download

Total:1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
120Kbintact1504577-20142 info_outlinePHAGE_Sulfol_1_NC_038017(45)38.32%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|NC_038017.1| Sulfolobus polyhedral virus 1 isolate S14, complete genome. 20222, gc%: 38.34%

Download details as .txt file:detail.txt file_download

Hypothetical protein
Phage-like protein
Regulatory protein

intact

Region 1, total 45 CDS

#CDS PositionBLAST HitE-ValueSequence
177..592PP_00001;hypothetical protein;phage;PHAGE_Sulfol_1_NC_0380171.09e-122Show info_outline
2599..1303PP_00002;putative DNA-binding protein;phage;PHAGE_Sulfol_1_NC_0380171.09e-169Show info_outline
31300..1497PP_00003;hypothetical protein;phage;PHAGE_Sulfol_1_NC_0380172.68e-40Show info_outline
41494..1826PP_00004;hypothetical protein;phage;PHAGE_Sulfol_1_NC_0380174.6e-72Show info_outline
51813..1932PP_00005;hypothetical protein;phage;PHAGE_Sulfol_1_NC_0380172.59e-20Show info_outline
61929..2180PP_00006;hypothetical protein;phage;PHAGE_Sulfol_1_NC_0380172.33e-57Show info_outline
72305..2427PP_00007;putative DNA-binding protein;phage;PHAGE_Sulfol_1_NC_0380175.16e-22Show info_outline
82414..2737PP_00008;hypothetical protein;phage;PHAGE_Sulfol_1_NC_0380175.68e-73Show info_outline
92771..2962PP_00009;hypothetical protein;phage;PHAGE_Sulfol_1_NC_0380177.28e-36Show info_outline
102946..3056PP_00010;hypothetical protein;phage;PHAGE_Sulfol_1_NC_0380174.56e-18Show info_outline
113064..3459PP_00011;hypothetical protein;phage;PHAGE_Sulfol_1_NC_0380171.41e-90Show info_outline
123590..3763PP_00012;hypothetical protein;phage;PHAGE_Sulfol_1_NC_0380174.08e-32Show info_outline
133750..3944PP_00013;hypothetical protein;phage;PHAGE_Sulfol_1_NC_0380173.26e-39Show info_outline
144186..4374PP_00014;hypothetical protein;phage;PHAGE_Sulfol_1_NC_0380176.45e-35Show info_outline
154364..4561PP_00015;putative DNA-binding protein;phage;PHAGE_Sulfol_1_NC_0380174.07e-42Show info_outline
164548..4838PP_00016;putative DNA-binding protein;phage;PHAGE_Sulfol_1_NC_0380173.67e-63Show info_outline
174838..5176PP_00017;hypothetical protein;phage;PHAGE_Sulfol_1_NC_0380171.09e-76Show info_outline
185475..5663PP_00018;hypothetical protein;phage;PHAGE_Sulfol_1_NC_0380171.2e-38Show info_outline
195660..6286PP_00019;hypothetical protein;phage;PHAGE_Sulfol_1_NC_0380176.09e-147Show info_outline
206283..6387PP_00020;hypothetical protein;phage;PHAGE_Sulfol_1_NC_0380171.16e-16Show info_outline
216380..6634PP_00021;hypothetical protein;phage;PHAGE_Sulfol_1_NC_0380171.26e-53Show info_outline
226781..7224PP_00022;putative DNA-binding protein;phage;PHAGE_Sulfol_1_NC_0380171.44e-103Show info_outline
237205..7552PP_00023;putative transcriptional regulator;phage;PHAGE_Sulfol_1_NC_0380171.88e-80Show info_outline
247810..7941PP_00024;hypothetical protein;phage;PHAGE_Sulfol_1_NC_0380179.07e-25Show info_outline
257967..9169PP_00025;structural protein VP8;phage;PHAGE_Sulfol_1_NC_0380170.0Show info_outline
269211..10284PP_00026;structural protein VP9;phage;PHAGE_Sulfol_1_NC_0380170.0Show info_outline
2710289..10852PP_00027;hypothetical protein;phage;PHAGE_Sulfol_1_NC_0380175.74e-132Show info_outline
2810846..11040PP_00028;hypothetical protein;phage;PHAGE_Sulfol_1_NC_0380171.68e-40Show info_outline
2911083..12015PP_00029;putative glycosyl transferase;phage;PHAGE_Sulfol_1_NC_0380170.0Show info_outline
3012010..12321PP_00030;hypothetical protein;phage;PHAGE_Sulfol_1_NC_0380174.5e-70Show info_outline
3112371..12583PP_00031;hypothetical protein;phage;PHAGE_Sulfol_1_NC_0380171.15e-42Show info_outline
3212849..13355PP_00032;putative methyltransferase;phage;PHAGE_Sulfol_1_NC_0380171.24e-121Show info_outline
3313357..13584PP_00033;hypothetical protein;phage;PHAGE_Sulfol_1_NC_0380179.21e-49Show info_outline
3413655..13909PP_00034;hypothetical protein;phage;PHAGE_Sulfol_1_NC_0380175.44e-56Show info_outline
3513884..14219PP_00035;structural protein VP2;phage;PHAGE_Sulfol_1_NC_0380171.47e-77Show info_outline
3614216..14434PP_00036;hypothetical protein;phage;PHAGE_Sulfol_1_NC_0380178.68e-43Show info_outline
3714424..14633PP_00037;hypothetical protein;phage;PHAGE_Sulfol_1_NC_0380171.78e-37Show info_outline
3814639..15463PP_00038;hypothetical protein;phage;PHAGE_Sulfol_1_NC_0380170.0Show info_outline
3915456..15794PP_00039;hypothetical protein;phage;PHAGE_Sulfol_1_NC_0380173.55e-77Show info_outline
4015807..16820PP_00040;structural protein VP7;phage;PHAGE_Sulfol_1_NC_0380170.0Show info_outline
4117106..18023PP_00041;structural protein VP6;phage;PHAGE_Sulfol_1_NC_0380170.0Show info_outline
4218023..18937PP_00042;structural protein VP5;phage;PHAGE_Sulfol_1_NC_0380170.0Show info_outline
4318979..19524PP_00043;structural protein VP4;phage;PHAGE_Sulfol_1_NC_0380172.61e-126Show info_outline
4419536..19895PP_00044;structural protein VP3;phage;PHAGE_Sulfol_1_NC_0380177.72e-77Show info_outline
4519906..20142PP_00045;structural protein VP1;phage;PHAGE_Sulfol_1_NC_0380174.58e-51Show info_outline

gi|00000000|ref|NC_038017.1| Sulfolobus polyhedral virus 1 isolate S14, complete genome. 20222, gc%: 38.34%

Download details as .txt file:detail.txt file_download

Bacterial, total 0 CDS

#CDS PositionBLAST HitE-ValueSequence

Phage Genes

Bacterial Genes

Phage Regions

GC Skew

GC Content

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Phage Genes

Bacterial Genes

Phage Regions

GC Skew

GC Content

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Click on a region or gene to view details

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