Submission Results

Sequence Name: Not Available

GenBank Accession Number: NC_029032

Download Results: NC_029032.PHASTEST.zip

gi|00000000|ref|NC_000000| MAG: Phormidium phage MIS-PhV1A, complete genome. 45532, gc%: 40.04%

Download summary as .txt file:summary.txt file_download

Total:1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
145.4Kbintact150621-45413 info_outlinePHAGE_Phormi_MIS_PhV1A_NC_029032(62)40.07%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|NC_029032.1| MAG: Phormidium phage MIS-PhV1A, complete genome. 45532, gc%: 40.04%

Download details as .txt file:detail.txt file_download

Phage-like protein
Hypothetical protein
Kinase

intact

Region 1, total 62 CDS

#CDS PositionBLAST HitE-ValueSequence
11..1575PP_00001;AAA ATPase;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290320.0Show info_outline
21580..1873PP_00002;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290321.12e-65Show info_outline
32017..2319PP_00003;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290328.78e-69Show info_outline
42600..2932PP_00004;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290322.08e-76Show info_outline
52952..3350PP_00005;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290321.68e-93Show info_outline
63429..3764PP_00006;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290321.36e-79Show info_outline
73927..4571PP_00007;DNA Methyltransferase;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290328.56e-160Show info_outline
84652..4816PP_00008;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290325.19e-31Show info_outline
94860..5210PP_00009;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290321.39e-80Show info_outline
105250..5483PP_00010;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290324.79e-52Show info_outline
115568..5774PP_00011;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290321.05e-42Show info_outline
125823..6041PP_00012;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290321.81e-44Show info_outline
136643..7149PP_00013;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290327.7e-121Show info_outline
147256..9217PP_00014;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290320.0Show info_outline
159329..9601PP_00015;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290321.43e-54Show info_outline
169728..10558PP_00016;DNA Ligase;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290320.0Show info_outline
1710713..11459PP_00017;nucleoid DNA binding protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290322.21e-172Show info_outline
1811456..11614PP_00018;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290323.48e-30Show info_outline
1911614..11919PP_00019;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290321.81e-68Show info_outline
2011989..15270PP_00020;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290320.0Show info_outline
2115274..17829PP_00021;DNA repair protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290320.0Show info_outline
2217865..19526PP_00022;gamma-glutamyl kinase;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290320.0Show info_outline
2319596..19967PP_00023;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290321.23e-87Show info_outline
2419978..20634PP_00024;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290325.79e-163Show info_outline
2520638..21453PP_00025;methyltransferase;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290320.0Show info_outline
2621516..21878PP_00026;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290327.86e-81Show info_outline
2721946..22566PP_00027;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290323.88e-143Show info_outline
2822623..23015PP_00028;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290321.17e-87Show info_outline
2923497..23823PP_00029;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290324.39e-72Show info_outline
3023925..24545PP_00030;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290326.73e-153Show info_outline
3125327..25809PP_00031;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290326.42e-112Show info_outline
3225806..26171PP_00032;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1B_NC_0289982.51e-83Show info_outline
3326267..26581PP_00033;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290321.95e-71Show info_outline
3426768..27172PP_00034;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290322.2e-97Show info_outline
3527287..27838PP_00035;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290326.89e-138Show info_outline
3627841..28140PP_00036;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290322.96e-68Show info_outline
3728256..28645PP_00037;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290329.27e-90Show info_outline
3828723..29172PP_00038;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290322.19e-104Show info_outline
3929266..30003PP_00039;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290320.0Show info_outline
4030110..31009PP_00040;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1B_NC_0289980.0Show info_outline
4131006..31209PP_00041;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290326.85e-43Show info_outline
4231302..31688PP_00042;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290326.12e-92Show info_outline
4331806..32021PP_00043;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290321.16e-46Show info_outline
4432098..32403PP_00044;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290329.75e-71Show info_outline
4532629..33183PP_00045;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290324.64e-136Show info_outline
4633193..33801PP_00046;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290321.07e-150Show info_outline
4733796..33906PP_00047;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290321.92e-15Show info_outline
4833939..34262PP_00048;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290322.32e-72Show info_outline
4934351..36096PP_00049;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1B_NC_0289980.0Show info_outline
5036093..36515PP_00050;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290321.74e-97Show info_outline
5136472..36579PP_00051;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290324.32e-18Show info_outline
5236524..37327PP_00052;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290320.0Show info_outline
5337358..37855PP_00053;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290322.31e-120Show info_outline
5437946..38191PP_00054;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290321.35e-51Show info_outline
5538192..38311PP_00055;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290321.42e-19Show info_outline
5638431..38994PP_00056;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290322.91e-137Show info_outline
5738975..39334PP_00057;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290321.55e-83Show info_outline
5839740..39979PP_00058;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290325.67e-52Show info_outline
5940058..40219PP_00059;phycobilisome degredation protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290321.17e-29Show info_outline
6040230..43418PP_00060;virulence associated E protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290320.0Show info_outline
6143415..43666PP_00061;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290323.03e-55Show info_outline
6244133..45413PP_00062;hypothetical protein;phage;PHAGE_Phormi_MIS_PhV1A_NC_0290320.0Show info_outline

gi|00000000|ref|NC_029032.1| MAG: Phormidium phage MIS-PhV1A, complete genome. 45532, gc%: 40.04%

Download details as .txt file:detail.txt file_download

Bacterial, total 0 CDS

#CDS PositionBLAST HitE-ValueSequence

Phage Genes

Bacterial Genes

Phage Regions

GC Skew

GC Content

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Phage Genes

Bacterial Genes

Phage Regions

GC Skew

GC Content

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Click on a region or gene to view details

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