Submission Results

Sequence Name: Not Available

GenBank Accession Number: NC_028801

Download Results: NC_028801.PHASTEST.zip

gi|00000000|ref|NC_000000| Mycobacterium phage Vortex, complete sequence. 68346, gc%: 66.45%

Download summary as .txt file:summary.txt file_download

Total:1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
168.2Kbintact150991-68223 info_outlinePHAGE_Mycoba_Vortex_NC_028801(52)66.47%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|NC_028801.1| Mycobacterium phage Vortex, complete sequence. 68346, gc%: 66.45%

Download details as .txt file:detail.txt file_download

Terminase
Phage-like protein
Hypothetical protein
Portal protein
Head protein
Tail protein
Lysis protein
DNA Helicase

intact

Region 1, total 99 CDS

#CDS PositionBLAST HitE-ValueSequence
11..567PP_00001;terminase small subunit;phage;PHAGE_Mycoba_Vortex_NC_0288011.56e-137Show info_outline
2564..2351PP_00002;gp2;phage;PHAGE_Mycoba_Colbert_NC_0286890.0Show info_outline
32436..2651PP_00003;gp3;phage;PHAGE_Mycoba_Colbert_NC_0286899.88e-46Show info_outline
42648..3013PP_00004;hypothetical protein;phage;PHAGE_Mycoba_Badfish_NC_0286827.55e-85Show info_outline
53081..3218PP_00005;hypothetical protein;phage;PHAGE_Mycoba_Newman_NC_0213101.32e-27Show info_outline
63365..3919PP_00006;gp6;phage;PHAGE_Mycoba_Vortex_NC_0288012.12e-133Show info_outline
73966..4412PP_00007;gp7;phage;PHAGE_Mycoba_Colbert_NC_0286894.07e-102Show info_outline
84442..6361PP_00008;portal protein;phage;PHAGE_Mycoba_PG1_NC_0052590.0Show info_outline
96361..8934PP_00009;portal;phage;PHAGE_Mycoba_ShiVal_NC_0286740.0Show info_outline
108927..9085PP_00010;gp10;phage;PHAGE_Mycoba_Vortex_NC_0288012.24e-27Show info_outline
119214..9351PP_00011;hypothetical protein;phage;PHAGE_Mycoba_PG1_NC_0052595.46e-23Show info_outline
129465..11210PP_00012;major capsid protein;phage;PHAGE_Mycoba_Soto_NC_0254380.0Show info_outline
1311310..12113PP_00013;gp13;phage;PHAGE_Mycoba_Vortex_NC_0288010.0Show info_outline
1412125..12967PP_00014;gp14;phage;PHAGE_Mycoba_Vortex_NC_0288010.0Show info_outline
1512967..13356PP_00015;hypothetical protein;phage;PHAGE_Mycoba_PG1_NC_0052593.41e-85Show info_outline
1613415..13714PP_00016;gp16;phage;PHAGE_Mycoba_JacAttac_NC_0237409.9e-66Show info_outline
1713711..14325PP_00017;gp17;phage;PHAGE_Mycoba_JacAttac_NC_0237401.12e-149Show info_outline
1814413..15213PP_00018;major tail protein;phage;PHAGE_Mycoba_PG1_NC_0052590.0Show info_outline
1915273..15503PP_00019;gp19;phage;PHAGE_Mycoba_JacAttac_NC_0237407.72e-45Show info_outline
2015581..16357PP_00020;queuine tRNA-ribosyltransferase;phage;PHAGE_Mycoba_PG1_NC_0052590.0Show info_outline
2116412..16711PP_00021;hypothetical protein;phage;PHAGE_Mycoba_PG1_NC_0052596.9e-65Show info_outline
2216785..17522PP_00022;head-to-tail adaptor;phage;PHAGE_Mycoba_PG1_NC_0052597.74e-177Show info_outline
2317522..18040PP_00023;gp23;phage;PHAGE_Mycoba_JacAttac_NC_0237401.69e-124Show info_outline
2418050..18385PP_00024;gp24;phage;PHAGE_Mycoba_Colbert_NC_0286894.63e-76Show info_outline
2518390..18812PP_00025;tail assembly chaperone;phage;PHAGE_Mycoba_PG1_NC_0052597.25e-98Show info_outline
2618863..19423PP_00026;hypothetical protein;phage;PHAGE_Mycoba_Badfish_NC_0286827.67e-131Show info_outline
2719484..19861PP_00027;gp27;phage;PHAGE_Mycoba_JacAttac_NC_0237402.75e-88Show info_outline
2819945..25923PP_00028;gp28;phage;PHAGE_Mycoba_Vortex_NC_0288010.0Show info_outline
2925933..27366PP_00029;minor tail protein;phage;PHAGE_Mycoba_PG1_NC_0052590.0Show info_outline
3027363..28475PP_00030;minor tail protein;phage;PHAGE_Mycoba_Badfish_NC_0286820.0Show info_outline
3128472..30727PP_00031;minor tail subunit;phage;PHAGE_Mycoba_ShiVal_NC_0286740.0Show info_outline
3230731..32077PP_00032;minor tail protein;phage;PHAGE_Mycoba_Vista_NC_0237270.0Show info_outline
3332080..33240PP_00033;minor tail protein;phage;PHAGE_Mycoba_Vista_NC_0237270.0Show info_outline
3433271..33660PP_00034;hypothetical protein;phage;PHAGE_Mycoba_PG1_NC_0052591.45e-87Show info_outline
3533669..34055PP_00035;hypothetical protein;phage;PHAGE_Mycoba_Newman_NC_0213109.63e-89Show info_outline
3634052..34702PP_00036;gp36;phage;PHAGE_Mycoba_Colbert_NC_0286893.27e-156Show info_outline
3734699..35298PP_00037;hypothetical protein;phage;PHAGE_Mycoba_PG1_NC_0052596.92e-145Show info_outline
3835295..35918PP_00038;gp38;phage;PHAGE_Mycoba_ShiVal_NC_0286741.52e-151Show info_outline
3935952..36320PP_00039;hypothetical protein;phage;PHAGE_Mycoba_PG1_NC_0052593.55e-84Show info_outline
4036320..36631PP_00040;hypothetical protein;phage;PHAGE_Mycoba_PG1_NC_0052598.95e-73Show info_outline
4136671..37078PP_00041;hypothetical protein;phage;PHAGE_Mycoba_PG1_NC_0052592.45e-91Show info_outline
4237078..38199PP_00042;hypothetical protein;phage;PHAGE_Mycoba_PG1_NC_0052590.0Show info_outline
4338181..38399PP_00043;hypothetical protein;phage;PHAGE_Mycoba_PG1_NC_0052591.06e-47Show info_outline
4438401..38694PP_00044;gp44;phage;PHAGE_Mycoba_Orion_NC_0081978.24e-67Show info_outline
4538691..38906PP_00045;helix-turn-helix DNA binding domain protein;phage;PHAGE_Mycoba_PG1_NC_0052592.33e-45Show info_outline
4638903..39427PP_00046;gp46;phage;PHAGE_Mycoba_Vortex_NC_0288018.11e-127Show info_outline
4739428..40066PP_00047;gp47;phage;PHAGE_Mycoba_Vortex_NC_0288012.16e-154Show info_outline
4840042..41397PP_00048;gp48;phage;PHAGE_Mycoba_Vortex_NC_0288010.0Show info_outline
4941407..42762PP_00049;lysin B;phage;PHAGE_Mycoba_PG1_NC_0052590.0Show info_outline
5042864..43484PP_00050;hypothetical protein;phage;PHAGE_Mycoba_PG1_NC_0052592.09e-149Show info_outline
5143542..44945PP_00051;gp52;phage;PHAGE_Mycoba_JacAttac_NC_0237400.0Show info_outline
5244948..46651PP_00052;gp52;phage;PHAGE_Mycoba_Phipps_NC_0289420.0Show info_outline
5346787..47080PP_00053;gp53;phage;PHAGE_Mycoba_Vortex_NC_0288012.43e-66Show info_outline
5447088..47303PP_00054;hypothetical protein;phage;PHAGE_Mycoba_PG1_NC_0052591.25e-45Show info_outline
5547300..47980PP_00055;gp55;phage;PHAGE_Mycoba_Vortex_NC_0288017.05e-166Show info_outline
5647977..48348PP_00056;gp56;phage;PHAGE_Mycoba_Vortex_NC_0288012.78e-85Show info_outline
5748342..48632PP_00057;gp56;phage;PHAGE_Mycoba_Vista_NC_0237273.6e-66Show info_outline
5848708..51515PP_00058;DNA primase/helicase;phage;PHAGE_Mycoba_Vortex_NC_0288010.0Show info_outline
5951594..52163PP_00059;gp59;phage;PHAGE_Mycoba_Vortex_NC_0288016.24e-137Show info_outline
6052160..54019PP_00060;gp60;phage;PHAGE_Mycoba_Vortex_NC_0288010.0Show info_outline
6154016..54474PP_00061;gp61;phage;PHAGE_Mycoba_Vortex_NC_0288012.95e-108Show info_outline
6254567..54719PP_00062;gp64;phage;PHAGE_Mycoba_JacAttac_NC_0237409.58e-30Show info_outline
6354719..55075PP_00063;hypothetical protein;phage;PHAGE_Mycoba_PG1_NC_0052592.24e-79Show info_outline
6455188..55547PP_00064;gp64;phage;PHAGE_Mycoba_Vortex_NC_0288011.52e-81Show info_outline
6555544..55861PP_00065;gp65;phage;PHAGE_Mycoba_Vortex_NC_0288011.01e-73Show info_outline
6656302..57066PP_00066;gp66;phage;PHAGE_Mycoba_Phipps_NC_0289420.0Show info_outline
6757078..57380PP_00067;hypothetical protein;phage;PHAGE_Mycoba_Soto_NC_0254382.27e-68Show info_outline
6857377..57559PP_00068;gp67;phage;PHAGE_Mycoba_ShiVal_NC_0286741.98e-37Show info_outline
6957590..58297PP_00069;gp69;phage;PHAGE_Mycoba_Vista_NC_0237274.64e-166Show info_outline
7058290..58871PP_00070;gp70;phage;PHAGE_Mycoba_Vortex_NC_0288011.97e-137Show info_outline
7158868..59290PP_00071;gp71;phage;PHAGE_Mycoba_Vortex_NC_0288011.01e-95Show info_outline
7259274..59459PP_00072;hypothetical protein;phage;PHAGE_Mycoba_PG1_NC_0052593.29e-39Show info_outline
7359494..59838PP_00073;gp76;phage;PHAGE_Mycoba_Kikipoo_NC_0289075.94e-76Show info_outline
7459840..60442PP_00074;gp74;phage;PHAGE_Mycoba_Vortex_NC_0288012.82e-145Show info_outline
7560408..60737PP_00075;hypothetical protein;phage;PHAGE_Mycoba_PG1_NC_0052592.51e-67Show info_outline
7660812..61021PP_00076;gp77;phage;PHAGE_Mycoba_JacAttac_NC_0237405.88e-44Show info_outline
7761103..61522PP_00077;gp76;phage;PHAGE_Mycoba_Colbert_NC_0286894.88e-100Show info_outline
7861558..61701PP_00078;gp77;phage;PHAGE_Mycoba_Colbert_NC_0286893.94e-25Show info_outline
7961756..62019PP_00079;hypothetical protein;phage;PHAGE_Mycoba_Badfish_NC_0286823.44e-58Show info_outline
8062016..62177PP_00080;hypothetical protein;phage;PHAGE_Mycoba_Badfish_NC_0286821.16e-30Show info_outline
8162177..62407PP_00081;hypothetical protein;phage;PHAGE_Mycoba_Newman_NC_0213102.03e-49Show info_outline
8262400..62786PP_00082;gp81;phage;PHAGE_Mycoba_ShiVal_NC_0286746.09e-89Show info_outline
8362830..63213PP_00083;hypothetical protein;phage;PHAGE_Mycoba_PG1_NC_0052592.05e-88Show info_outline
8463236..63415PP_00084;hypothetical protein;phage;PHAGE_Mycoba_PG1_NC_0052591.41e-35Show info_outline
8563428..63688PP_00085;hypothetical protein;phage;PHAGE_Mycoba_PG1_NC_0052597.15e-57Show info_outline
8663685..63882PP_00086;hypothetical protein;phage;PHAGE_Mycoba_PG1_NC_0052591.91e-40Show info_outline
8763879..64103PP_00087;gp87;phage;PHAGE_Mycoba_Phipps_NC_0289421.37e-47Show info_outline
8864097..64282PP_00088;gp92;phage;PHAGE_Mycoba_Kikipoo_NC_0289071.2e-37Show info_outline
8964279..64500PP_00089;gp89;phage;PHAGE_Mycoba_Colbert_NC_0286896.22e-48Show info_outline
9064620..64922PP_00090;gp90;phage;PHAGE_Mycoba_Vortex_NC_0288011.1e-68Show info_outline
9164954..65151PP_00091;gp91;phage;PHAGE_Mycoba_Vortex_NC_0288011.14e-41Show info_outline
9265219..65494PP_00092;gp92;phage;PHAGE_Mycoba_Colbert_NC_0286891.52e-59Show info_outline
9365491..65736PP_00093;hypothetical protein;phage;PHAGE_Mycoba_PG1_NC_0052591.36e-51Show info_outline
9465775..66173PP_00094;gp94;phage;PHAGE_Mycoba_Colbert_NC_0286892.48e-94Show info_outline
9566294..67025PP_00095;gp95;phage;PHAGE_Mycoba_Vortex_NC_0288013.95e-176Show info_outline
9667022..67201PP_00096;hypothetical protein;phage;PHAGE_Mycoba_PG1_NC_0052591.35e-33Show info_outline
9767198..67434PP_00097;hypothetical protein;phage;PHAGE_Mycoba_Badfish_NC_0286829.53e-53Show info_outline
9867487..67888PP_00098;gp98;phage;PHAGE_Mycoba_Vortex_NC_0288011.55e-94Show info_outline
9967888..68223PP_00099;gp99;phage;PHAGE_Mycoba_Vortex_NC_0288018.17e-76Show info_outline

gi|00000000|ref|NC_028801.1| Mycobacterium phage Vortex, complete sequence. 68346, gc%: 66.45%

Download details as .txt file:detail.txt file_download

Bacterial, total 0 CDS

#CDS PositionBLAST HitE-ValueSequence

Phage Genes

Bacterial Genes

Phage Regions

GC Skew

GC Content

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Phage Genes

Bacterial Genes

Phage Regions

GC Skew

GC Content

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Click on a region or gene to view details

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