Submission Results

Sequence Name: Not Available

GenBank Accession Number: NC_021795

Download Results: NC_021795.PHASTEST.zip

gi|00000000|ref|NC_000000| Cellulophaga phage phi17:1, complete genome. 38776, gc%: 36.48%

Download summary as .txt file:summary.txt file_download

Total:1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
138.7Kbintact150654-38711 info_outlinePHAGE_Cellul_phi17:1_NC_021795(65)36.49%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|NC_021795.1| Cellulophaga phage phi17:1, complete genome. 38776, gc%: 36.48%

Download details as .txt file:detail.txt file_download

Hypothetical protein
Exonuclease
DNA Helicase
Phage-like protein
Terminase
Portal protein
Head protein
Fiber protein
Tail protein
Holin

intact

Region 1, total 65 CDS

#CDS PositionBLAST HitE-ValueSequence
14..621PP_00001;1_NC_021795: hypothetical protein;phage;PHAGE_Cellul_phi172.29e-154Show info_outline
2618..782PP_00002;1_NC_021790: hypothetical protein;phage;PHAGE_Cellul_phi181.93e-31Show info_outline
3786..1019PP_00003;1_NC_021795: hypothetical protein;phage;PHAGE_Cellul_phi178.08e-50Show info_outline
41007..1180PP_00004;1_NC_021795: hypothetical protein;phage;PHAGE_Cellul_phi179.88e-35Show info_outline
51161..1334PP_00005;1_NC_021795: hypothetical protein;phage;PHAGE_Cellul_phi173.62e-32Show info_outline
61474..1758PP_00006;1_NC_021795: hypothetical protein;phage;PHAGE_Cellul_phi174.34e-64Show info_outline
71866..2231PP_00007;1_NC_021795: hypothetical protein;phage;PHAGE_Cellul_phi172.46e-83Show info_outline
82432..2734PP_00008;1_NC_021795: hypothetical protein;phage;PHAGE_Cellul_phi173.11e-69Show info_outline
92747..2980PP_00009;1_NC_021795: hypothetical protein;phage;PHAGE_Cellul_phi179.78e-51Show info_outline
102980..4263PP_00010;1_NC_021795: hypothetical protein;phage;PHAGE_Cellul_phi170.0Show info_outline
114308..4982PP_00011;1_NC_021795: hypothetical protein;phage;PHAGE_Cellul_phi174.32e-164Show info_outline
124997..5302PP_00012;1_NC_021795: hypothetical protein;phage;PHAGE_Cellul_phi173.76e-67Show info_outline
135345..5905PP_00013;1_NC_021795: exonuclease, DNA polymerase III subunit epsilon;phage;PHAGE_Cellul_phi171.4e-134Show info_outline
145959..7443PP_00014;1_NC_021795: helicase;phage;PHAGE_Cellul_phi170.0Show info_outline
157445..7768PP_00015;1_NC_021795: hypothetical protein;phage;PHAGE_Cellul_phi171.36e-73Show info_outline
167771..7914PP_00016;1_NC_021795: hypothetical protein;phage;PHAGE_Cellul_phi171.6e-26Show info_outline
177923..8132PP_00017;1_NC_021795: hypothetical protein;phage;PHAGE_Cellul_phi178.99e-44Show info_outline
188129..8518PP_00018;1_NC_021795: hypothetical protein;phage;PHAGE_Cellul_phi177.31e-94Show info_outline
198540..8767PP_00019;1_NC_021795: hypothetical protein;phage;PHAGE_Cellul_phi174.16e-47Show info_outline
208760..8882PP_00020;1_NC_021795: hypothetical protein;phage;PHAGE_Cellul_phi178.3e-22Show info_outline
218885..9046PP_00021;1_NC_021795: hypothetical protein;phage;PHAGE_Cellul_phi171.04e-30Show info_outline
229036..9443PP_00022;1_NC_021795: hypothetical protein;phage;PHAGE_Cellul_phi172.16e-93Show info_outline
239477..9656PP_00023;1_NC_021795: hypothetical protein;phage;PHAGE_Cellul_phi178.84e-34Show info_outline
249675..9851PP_00024;1_NC_021795: hypothetical protein;phage;PHAGE_Cellul_phi178.73e-33Show info_outline
259937..10188PP_00025;1_NC_021795: hypothetical protein;phage;PHAGE_Cellul_phi176.2e-54Show info_outline
2610188..11093PP_00026;1_NC_021795: VirE N-domain protein;phage;PHAGE_Cellul_phi170.0Show info_outline
2711090..11332PP_00027;1_NC_021795: hypothetical protein;phage;PHAGE_Cellul_phi171.12e-53Show info_outline
2811322..11621PP_00028;1_NC_021795: hypothetical protein;phage;PHAGE_Cellul_phi172.07e-68Show info_outline
2911682..13088PP_00029;1_NC_021790: virulance associated protein E, VirE;phage;PHAGE_Cellul_phi180.0Show info_outline
3013343..13474PP_00030;1_NC_021795: hypothetical protein;phage;PHAGE_Cellul_phi172.38e-23Show info_outline
3113545..13931PP_00031;1_NC_021795: hypothetical protein;phage;PHAGE_Cellul_phi175.58e-89Show info_outline
3213922..14686PP_00032;1_NC_021795: VRR-NUC domain containing protein;phage;PHAGE_Cellul_phi170.0Show info_outline
3314692..15078PP_00033;1_NC_021795: hypothetical protein;phage;PHAGE_Cellul_phi172.89e-90Show info_outline
3415141..15500PP_00034;1_NC_021795: hypothetical protein;phage;PHAGE_Cellul_phi172.59e-81Show info_outline
3515600..16088PP_00035;1_NC_021795: phage terminase small subunit;phage;PHAGE_Cellul_phi172.18e-116Show info_outline
3616092..17492PP_00036;1_NC_021795: phage terminase large subunit;phage;PHAGE_Cellul_phi170.0Show info_outline
3717531..18937PP_00037;1_NC_021795: phage portal protein;phage;PHAGE_Cellul_phi170.0Show info_outline
3818888..19760PP_00038;1_NC_021795: phage minor capsid protein;phage;PHAGE_Cellul_phi170.0Show info_outline
3919802..20098PP_00039;1_NC_021795: hypothetical protein;phage;PHAGE_Cellul_phi175.78e-67Show info_outline
4020091..20243PP_00040;1_NC_021795: hypothetical protein;phage;PHAGE_Cellul_phi175.55e-29Show info_outline
4120251..20718PP_00041;1_NC_021795: DNA methylase;phage;PHAGE_Cellul_phi176.68e-113Show info_outline
4220700..21923PP_00042;1_NC_021795: putative glycosyltransferase;phage;PHAGE_Cellul_phi170.0Show info_outline
4321928..22110PP_00043;1_NC_021795: hypothetical protein;phage;PHAGE_Cellul_phi172.18e-36Show info_outline
4422111..22278PP_00044;1_NC_021795: hypothetical protein;phage;PHAGE_Cellul_phi177.06e-33Show info_outline
4522275..22484PP_00045;1_NC_021795: hypothetical protein;phage;PHAGE_Cellul_phi175.22e-44Show info_outline
4622500..22901PP_00046;1_NC_021795: hypothetical protein;phage;PHAGE_Cellul_phi175.05e-93Show info_outline
4722898..23089PP_00047;1_NC_021790: hypothetical protein;phage;PHAGE_Cellul_phi183.21e-40Show info_outline
4823193..23855PP_00048;1_NC_021795: phage prohead protease protein;phage;PHAGE_Cellul_phi172.45e-162Show info_outline
4923858..25102PP_00049;1_NC_021795: phage major capsid protein;phage;PHAGE_Cellul_phi170.0Show info_outline
5025172..25714PP_00050;1_NC_021795: head-tail connector protein;phage;PHAGE_Cellul_phi175.08e-132Show info_outline
5125716..26168PP_00051;1_NC_021795: phage head-tail joining protein;phage;PHAGE_Cellul_phi171.02e-106Show info_outline
5226169..28427PP_00052;1_NC_021795: putative phage tail fiber;phage;PHAGE_Cellul_phi170.0Show info_outline
5328433..28846PP_00053;1_NC_021795: putative phage tail component;phage;PHAGE_Cellul_phi173.81e-96Show info_outline
5428850..29287PP_00054;1_NC_021790: hypothetical protein;phage;PHAGE_Cellul_phi188.55e-101Show info_outline
5529292..29726PP_00055;1_NC_021791: phage tail protein;phage;PHAGE_Cellul_phi125.78e-101Show info_outline
5629740..30153PP_00056;1_NC_021795: hypothetical protein;phage;PHAGE_Cellul_phi171.54e-96Show info_outline
5730168..30452PP_00057;1_NC_021795: hypothetical protein;phage;PHAGE_Cellul_phi177.5e-65Show info_outline
5830454..32217PP_00058;1_NC_021795: putative tail length tape measure protein;phage;PHAGE_Cellul_phi170.0Show info_outline
5932220..34937PP_00059;1_NC_021795: structural protein;phage;PHAGE_Cellul_phi170.0Show info_outline
6034939..35607PP_00060;1_NC_021791: phage tail protein;phage;PHAGE_Cellul_phi121.53e-21Show info_outline
6135610..36770PP_00061;1_NC_021795: phage tail protein;phage;PHAGE_Cellul_phi170.0Show info_outline
6236770..37207PP_00062;1_NC_021795: hypothetical protein;phage;PHAGE_Cellul_phi173.0e-100Show info_outline
6337180..37791PP_00063;1_NC_021795: putative holin;phage;PHAGE_Cellul_phi173.04e-147Show info_outline
6437754..38296PP_00064;1_NC_021795: N-acetylmuramoyl-L-alanine amidase;phage;PHAGE_Cellul_phi173.24e-132Show info_outline
6538280..38711PP_00065;1_NC_021795: hypothetical protein;phage;PHAGE_Cellul_phi178.16e-94Show info_outline

gi|00000000|ref|NC_021795.1| Cellulophaga phage phi17:1, complete genome. 38776, gc%: 36.48%

Download details as .txt file:detail.txt file_download

Bacterial, total 0 CDS

#CDS PositionBLAST HitE-ValueSequence

Phage Genes

Bacterial Genes

Phage Regions

GC Skew

GC Content

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Phage Genes

Bacterial Genes

Phage Regions

GC Skew

GC Content

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Click on a region or gene to view details

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