Submission Results

Sequence Name: Not Available

GenBank Accession Number: NC_010155

Download Results: NC_010155.PHASTEST.zip

gi|00000000|ref|NC_000000| Acidianus filamentous virus 3, partial viral genome. 40449, gc%: 36.85%

Download summary as .txt file:summary.txt file_download

Total:1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
139.6Kbintact15068467-40068 info_outlinePHAGE_Acidia_3_NC_010155(68)36.89%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|NC_010155.1| Acidianus filamentous virus 3, partial viral genome. 40449, gc%: 36.85%

Download details as .txt file:detail.txt file_download

Hypothetical protein
Phage-like protein
DNA Helicase
Regulatory protein

intact

Region 1, total 68 CDS

#CDS PositionBLAST HitE-ValueSequence
1467..829PP_00001;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101553.04e-81Show info_outline
2833..1063PP_00002;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101551.9e-47Show info_outline
31070..1255PP_00003;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101553.19e-35Show info_outline
41252..1506PP_00004;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101551.66e-51Show info_outline
51507..1929PP_00005;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101552.76e-95Show info_outline
61961..2203PP_00006;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101553.45e-48Show info_outline
72181..2471PP_00007;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101551.58e-61Show info_outline
82473..3084PP_00008;putative nuclease;phage;PHAGE_Acidia_3_NC_0101553.17e-149Show info_outline
93081..4862PP_00009;putative helicase;phage;PHAGE_Acidia_3_NC_0101550.0Show info_outline
104846..5085PP_00010;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101552.69e-49Show info_outline
115147..5332PP_00011;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101552.65e-36Show info_outline
125339..5890PP_00012;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101553.02e-127Show info_outline
135884..6033PP_00013;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101558.17e-30Show info_outline
146124..6363PP_00014;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101555.93e-50Show info_outline
156367..6798PP_00015;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101553.03e-91Show info_outline
166843..7172PP_00016;DNA binding protein;phage;PHAGE_Acidia_3_NC_0101551.33e-73Show info_outline
177218..7676PP_00017;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101553.52e-103Show info_outline
187748..8431PP_00018;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101557.16e-169Show info_outline
198610..8867PP_00019;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101551.73e-52Show info_outline
209057..9545PP_00020;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101557.65e-114Show info_outline
219571..9840PP_00021;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101554.21e-55Show info_outline
2210225..10479PP_00022;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101551.12e-53Show info_outline
2310673..12367PP_00023;putative helicase;phage;PHAGE_Acidia_3_NC_0101550.0Show info_outline
2412443..13459PP_00024;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101550.0Show info_outline
2513527..13895PP_00025;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101554.4e-86Show info_outline
2613930..14205PP_00026;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101551.31e-60Show info_outline
2714176..14643PP_00027;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101555.13e-107Show info_outline
2814647..14949PP_00028;putative regulatory protein;phage;PHAGE_Acidia_3_NC_0101556.95e-66Show info_outline
2915035..15325PP_00029;putative regulatory protein;phage;PHAGE_Acidia_3_NC_0101553.56e-63Show info_outline
3015319..16122PP_00030;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101550.0Show info_outline
3116266..16625PP_00031;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101551.91e-78Show info_outline
3216632..17009PP_00032;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101551.07e-82Show info_outline
3317002..17538PP_00033;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101551.08e-124Show info_outline
3417583..18083PP_00034;structural protein;phage;PHAGE_Acidia_3_NC_0101557.0e-121Show info_outline
3518092..18706PP_00035;structural protein;phage;PHAGE_Acidia_3_NC_0101553.42e-149Show info_outline
3618766..19059PP_00036;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101559.45e-64Show info_outline
3719021..19239PP_00037;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101559.79e-46Show info_outline
3819236..19703PP_00038;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101551.2e-109Show info_outline
3919705..20337PP_00039;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101552.68e-157Show info_outline
4020361..20549PP_00040;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101557.67e-35Show info_outline
4120546..21385PP_00041;putative glycosyltransferase;phage;PHAGE_Acidia_3_NC_0101550.0Show info_outline
4221382..21669PP_00042;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101551.18e-60Show info_outline
4321710..22513PP_00043;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101550.0Show info_outline
4422573..22788PP_00044;hypothetical protein;phage;PHAGE_Acidia_8_NC_0101543.61e-40Show info_outline
4522814..23806PP_00045;putative group 1 glycosyl transferase;phage;PHAGE_Acidia_3_NC_0101550.0Show info_outline
4623848..24066PP_00046;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101551.46e-45Show info_outline
4724077..24550PP_00047;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101551.48e-111Show info_outline
4824556..25305PP_00048;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101554.29e-175Show info_outline
4925302..25982PP_00049;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101557.79e-162Show info_outline
5025992..26423PP_00050;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101557.14e-96Show info_outline
5126425..26781PP_00051;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101555.71e-82Show info_outline
5226765..27322PP_00052;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101554.45e-133Show info_outline
5327319..28527PP_00053;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101550.0Show info_outline
5428557..32606PP_00054;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101550.0Show info_outline
5532633..33514PP_00055;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101550.0Show info_outline
5633552..34046PP_00056;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101551.99e-117Show info_outline
5734046..34837PP_00057;putative glycosyltransferases;phage;PHAGE_Acidia_3_NC_0101550.0Show info_outline
5834865..35284PP_00058;putative protein phosphatase;phage;PHAGE_Acidia_3_NC_0101551.05e-100Show info_outline
5935292..35489PP_00059;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101558.76e-38Show info_outline
6035497..35970PP_00060;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101552.92e-114Show info_outline
6135967..36674PP_00061;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101554.68e-170Show info_outline
6236723..37007PP_00062;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101559.24e-61Show info_outline
6336997..37632PP_00063;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101551.65e-154Show info_outline
6437629..38333PP_00064;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101557.18e-170Show info_outline
6538320..38520PP_00065;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101554.26e-41Show info_outline
6638557..39180PP_00066;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101552.51e-151Show info_outline
6739180..39881PP_00067;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101552.76e-171Show info_outline
6839871..40068PP_00068;hypothetical protein;phage;PHAGE_Acidia_3_NC_0101551.97e-40Show info_outline

gi|00000000|ref|NC_010155.1| Acidianus filamentous virus 3, partial viral genome. 40449, gc%: 36.85%

Download details as .txt file:detail.txt file_download

Bacterial, total 0 CDS

#CDS PositionBLAST HitE-ValueSequence

Phage Genes

Bacterial Genes

Phage Regions

GC Skew

GC Content

lock_open

Phage Genes

Bacterial Genes

Phage Regions

GC Skew

GC Content

lock_open
Click on a region or gene to view details

We require the use of cookies for essential features like storing your previously submitted PHASTEST queries. Rejecting the usage of cookies will result in certain features being disabled. By clicking ACCEPT or continuing to use the website you are agreeing to our use of cookies.

ACCEPT