Submission Results

Sequence Name: Not Available

GenBank Accession Number: MK721194

Download Results: MK721194.PHASTEST.zip

gi|00000000|ref|NC_000000| Enterococcus phage vB_EfaS_Ef7.1, complete genome. 58018, gc%: 40.03%

Download summary as .txt file:summary.txt file_download

Total:1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
156.9Kbintact150102156-57070 info_outlinePHAGE_Entero_IMEEF1_NC_041959(76)39.92%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|MK721194.1| Enterococcus phage vB_EfaS_Ef7.1, complete genome. 58018, gc%: 40.03%

Download details as .txt file:detail.txt file_download

Hypothetical protein
Phage-like protein
Terminase
Holin
Portal protein
Head protein
Tail protein
Fiber protein
Inhibitor protein
Regulatory protein
Replication protein
DNA Helicase
Endonuclease
Crossover junction protein
Kinase
Protease

intact

Region 1, total 97 CDS

#CDS PositionBLAST HitE-ValueSequence
1156..296PP_00001;hypothetical protein;phage;PHAGE_Entero_IMEEF1_NC_0419595.13e-26Show info_outline
2473..685PP_00002;hypothetical protein;phage;PHAGE_Entero_VD13_NC_0418613.25e-10Show info_outline
3687..905PP_00003;hypothetical protein;phage;PHAGE_Strept_SPQS1_NC_0218681.18e-42Show info_outline
4906..1763PP_00004;hypothetical protein;phage;PHAGE_Entero_vB_IME198_NC_0290167.02e-149Show info_outline
52215..2586PP_00005;hypothetical protein;phage;PHAGE_Entero_BC611_NC_0180866.37e-71Show info_outline
62606..2908PP_00006;hypothetical protein;phage;PHAGE_Entero_IMEEF1_NC_0419591.07e-36Show info_outline
72910..3170PP_00007;hypothetical protein;phage;PHAGE_Entero_vB_IME198_NC_0290161.85e-56Show info_outline
83195..3332PP_00008;hypothetical protein;phage;PHAGE_Strept_SPQS1_NC_0218686.87e-27Show info_outline
93336..3716PP_00009;methyltransferase;phage;PHAGE_Strept_SPQS1_NC_0218681.98e-62Show info_outline
103718..4107PP_00010;hypothetical protein;phage;PHAGE_Entero_IMEEF1_NC_0419595.63e-50Show info_outline
114107..4364PP_00011;hypothetical protein;phage;PHAGE_Entero_IMEEF1_NC_0419598.39e-52Show info_outline
124364..4678PP_00012;hypothetical protein;phage;PHAGE_Entero_vB_IME198_NC_0290161.19e-68Show info_outline
134959..5558PP_00013;terminase small subunit;phage;PHAGE_Entero_IMEEF1_NC_0419591.99e-145Show info_outline
145572..5916PP_00014;hypothetical protein;phage;PHAGE_Entero_IMEEF1_NC_0419591.07e-76Show info_outline
155935..6183PP_00015;holin;phage;PHAGE_Entero_IMEEF1_NC_0419591.56e-47Show info_outline
166246..7517PP_00016;phage terminase large subunit;phage;PHAGE_Entero_SAP6_NC_0419600.0Show info_outline
177574..9109PP_00017;portal protein;phage;PHAGE_Entero_VD13_NC_0418610.0Show info_outline
189121..9876PP_00018;head morphogenesis protein;phage;PHAGE_Entero_IMEEF1_NC_0419590.0Show info_outline
199987..10655PP_00019;DUF4355 domain-containing protein;phage;PHAGE_Entero_VD13_NC_0418614.67e-158Show info_outline
2010704..11510PP_00020;major head protein;phage;PHAGE_Entero_BC611_NC_0180860.0Show info_outline
2111665..12105PP_00021;major tail protein;phage;PHAGE_Entero_BC611_NC_0180861.15e-97Show info_outline
2212165..12569PP_00022;putative head-tail connector protein;phage;PHAGE_Entero_VD13_NC_0418611.01e-95Show info_outline
2312585..12962PP_00023;hypothetical protein;phage;PHAGE_Entero_VD13_NC_0418612.67e-82Show info_outline
2412947..13327PP_00024;hypothetical protein;phage;PHAGE_Entero_BC611_NC_0180865.99e-65Show info_outline
2513340..13774PP_00025;tail protein;phage;PHAGE_Entero_IMEEF1_NC_0419591.08e-98Show info_outline
2613795..14484PP_00026;major tail protein;phage;PHAGE_Entero_SAP6_NC_0419609.21e-167Show info_outline
2714628..15068PP_00027;hypothetical protein;phage;PHAGE_Entero_BC611_NC_0180869.15e-103Show info_outline
2815079..15303PP_00028;hypothetical protein;phage;PHAGE_Strept_SPQS1_NC_0218689.13e-48Show info_outline
2915316..18201PP_00029;minor capsid protein;phage;PHAGE_Strept_SPQS1_NC_0218680.0Show info_outline
3018215..22210PP_00030;phage tail fiber protein;phage;PHAGE_Entero_SAP6_NC_0419600.0Show info_outline
3122222..25527PP_00031;phage minor structural protein;phage;PHAGE_Entero_SAP6_NC_0419600.0Show info_outline
3225605..26318PP_00032;N-acetylmuramoyl-L-alanine amidase;phage;PHAGE_Strept_SPQS1_NC_0218682.07e-175Show info_outline
3326376..26477PP_00033;hypothetical protein;phage;PHAGE_Entero_BC611_NC_0180861.54e-14Show info_outline
3426609..27037PP_00034;hypothetical protein;phage;PHAGE_Strept_SPQS1_NC_0218687.47e-101Show info_outline
3527106..27249PP_00035;hypothetical protein;phage;PHAGE_Strept_SPQS1_NC_0218681.34e-27Show info_outline
3627548..28372PP_00036;hypothetical protein;phage;PHAGE_Strept_SPQS1_NC_0218680.0Show info_outline
3728425..28859PP_00037;hypothetical protein;phage;PHAGE_Entero_IMEEF1_NC_0419593.78e-101Show info_outline
3828862..29248PP_00038;hypothetical protein;phage;PHAGE_Entero_BC611_NC_0180861.06e-87Show info_outline
3929248..29448PP_00039;hypothetical protein;phage;PHAGE_Entero_IMEEF1_NC_0419593.57e-42Show info_outline
4029766..29906PP_00040;hypothetical protein;phage;PHAGE_Strept_SPQS1_NC_0218688.64e-24Show info_outline
4130858..31199PP_00042;hypothetical protein;phage;PHAGE_Entero_VD13_NC_0418617.58e-75Show info_outline
4231199..31360PP_00043;host recBCD nuclease inhibitor;phage;PHAGE_Entero_BC611_NC_0180861.39e-11Show info_outline
4331350..31595PP_00044;hypothetical protein;phage;PHAGE_Entero_IMEEF1_NC_0419593.58e-31Show info_outline
4431595..31783PP_00045;hypothetical protein;phage;PHAGE_Entero_BC611_NC_0180861.1e-38Show info_outline
4531795..32739PP_00046;DNA primase;phage;PHAGE_Entero_SAP6_NC_0419600.0Show info_outline
4632814..33167PP_00047;transcriptional regulator;phage;PHAGE_Entero_IMEEF1_NC_0419596.98e-81Show info_outline
4733216..33992PP_00048;DNA replication protein;phage;PHAGE_Entero_IMEEF1_NC_0419590.0Show info_outline
4834004..35368PP_00049;replicative DNA helicase;phage;PHAGE_Entero_SAP6_NC_0419600.0Show info_outline
4935381..35614PP_00050;transcriptional regulator;phage;PHAGE_Entero_BC611_NC_0180867.73e-52Show info_outline
5035611..35835PP_00051;hypothetical protein;phage;PHAGE_Entero_IMEEF1_NC_0419591.49e-45Show info_outline
5135847..36107PP_00052;hypothetical protein;phage;PHAGE_Entero_IMEEF1_NC_0419593.18e-53Show info_outline
5236180..36632PP_00053;HNH endonuclease;phage;PHAGE_Entero_SAP6_NC_0419601.34e-107Show info_outline
5336617..37645PP_00054;hypothetical protein;phage;PHAGE_Entero_VD13_NC_0418610.0Show info_outline
5437645..37980PP_00055;hypothetical protein;phage;PHAGE_Entero_vB_IME198_NC_0290163.18e-68Show info_outline
5537977..38546PP_00056;crossover junction endodeoxyribonuclease RuvC;phage;PHAGE_Entero_SAP6_NC_0419601.19e-135Show info_outline
5638543..39112PP_00057;putative adenylate kinase;phage;PHAGE_Strept_SPQS1_NC_0218683.62e-129Show info_outline
5739105..39737PP_00058;hypothetical protein;phage;PHAGE_Entero_SAP6_NC_0419608.36e-153Show info_outline
5839829..40392PP_00059;hypothetical protein;phage;PHAGE_Entero_BC611_NC_0180869.88e-135Show info_outline
5940600..40716PP_00061;hypothetical protein;phage;PHAGE_Entero_IMEEF1_NC_0419598.79e-15Show info_outline
6040728..40901PP_00062;hypothetical protein;phage;PHAGE_Entero_IMEEF1_NC_0419593.31e-13Show info_outline
6141124..41351PP_00064;hypothetical protein;phage;PHAGE_Entero_BC611_NC_0180861.45e-37Show info_outline
6241344..41553PP_00065;hypothetical protein;phage;PHAGE_Strept_SPQS1_NC_0218683.67e-41Show info_outline
6341556..41768PP_00066;hypothetical protein;phage;PHAGE_Entero_BC611_NC_0180862.01e-43Show info_outline
6441769..42122PP_00067;hypothetical protein;phage;PHAGE_Entero_vB_IME198_NC_0290162.3e-47Show info_outline
6542122..42307PP_00068;hypothetical protein;phage;PHAGE_Entero_IMEEF1_NC_0419597.77e-38Show info_outline
6642386..44737PP_00069;DNA polymerase I;phage;PHAGE_Strept_SPQS1_NC_0218680.0Show info_outline
6745017..45451PP_00071;hypothetical protein;phage;PHAGE_Entero_SAP6_NC_0419602.77e-94Show info_outline
6845453..45848PP_00072;hypothetical protein;phage;PHAGE_Strept_SPQS1_NC_0218682.55e-81Show info_outline
6945841..46536PP_00073;ATP-dependent metalloprotease;phage;PHAGE_Entero_SAP6_NC_0419605.16e-161Show info_outline
7046595..46978PP_00074;hypothetical protein;phage;PHAGE_Entero_IMEEF1_NC_0419594.1e-65Show info_outline
7146979..47437PP_00075;hypothetical protein;phage;PHAGE_Entero_IMEEF1_NC_0419596.31e-76Show info_outline
7247438..48262PP_00076;hypothetical protein;phage;PHAGE_Entero_VD13_NC_0418614.6e-125Show info_outline
7348273..48473PP_00077;hypothetical protein;phage;PHAGE_Entero_IMEEF1_NC_0419596.67e-40Show info_outline
7448486..48920PP_00078;hypothetical protein;phage;PHAGE_Entero_vB_IME198_NC_0290163.71e-20Show info_outline
7548997..49191PP_00079;hypothetical protein;phage;PHAGE_Entero_IMEEF1_NC_0419591.87e-37Show info_outline
7649188..49745PP_00080;HNH endonuclease family protein;phage;PHAGE_Strept_SPQS1_NC_0218681.33e-68Show info_outline
7749745..50002PP_00081;hypothetical protein;phage;PHAGE_Entero_IMEEF1_NC_0419597.32e-50Show info_outline
7850002..50214PP_00082;hypothetical protein;phage;PHAGE_Entero_BC611_NC_0180861.42e-40Show info_outline
7950227..50436PP_00083;hypothetical protein;phage;PHAGE_Entero_BC611_NC_0180861.4e-43Show info_outline
8050450..50698PP_00084;hypothetical protein;phage;PHAGE_Entero_IMEEF1_NC_0419592.54e-55Show info_outline
8150691..50957PP_00085;hypothetical protein;phage;PHAGE_Entero_BC611_NC_0180866.51e-59Show info_outline
8250959..51264PP_00086;DNA binding protein;phage;PHAGE_Entero_IMEEF1_NC_0419593.89e-67Show info_outline
8352641..52964PP_00088;hypothetical protein;phage;PHAGE_Strept_SPQS1_NC_0218681.75e-63Show info_outline
8452957..53061PP_00089;hypothetical protein;phage;PHAGE_Entero_BC611_NC_0180861.09e-15Show info_outline
8553063..53449PP_00090;hypothetical protein;phage;PHAGE_Strept_SPQS1_NC_0218682.26e-88Show info_outline
8653442..53816PP_00091;hypothetical protein;phage;PHAGE_Entero_BC611_NC_0180868.62e-84Show info_outline
8753893..54027PP_00092;hypothetical protein;phage;PHAGE_Entero_IMEEF1_NC_0419594.7e-23Show info_outline
8854094..54321PP_00093;hypothetical protein;phage;PHAGE_Strept_SPQS1_NC_0218684.77e-45Show info_outline
8954457..54906PP_00094;hypothetical protein;phage;PHAGE_Entero_BC611_NC_0180863.77e-101Show info_outline
9054893..55102PP_00095;hypothetical protein;phage;PHAGE_Strept_SPQS1_NC_0218682.17e-43Show info_outline
9155185..55388PP_00096;hypothetical protein;phage;PHAGE_Entero_phiEF24C_NC_0099041.8e-17Show info_outline
9255407..55727PP_00097;hypothetical protein;phage;PHAGE_Entero_IMEEF1_NC_0419592.8e-59Show info_outline
9355818..56057PP_00098;hypothetical protein;phage;PHAGE_Entero_phiEF24C_NC_0099048.4e-52Show info_outline
9456137..56286PP_00099;hypothetical protein;phage;PHAGE_Entero_EfV12_phi1_NC_0480872.18e-23Show info_outline
9556366..56500PP_00100;hypothetical protein;phage;PHAGE_Entero_phiSHEF2_NC_0420216.2e-19Show info_outline
9656584..56718PP_00101;hypothetical protein;phage;PHAGE_Entero_vB_IME198_NC_0290161.0e-16Show info_outline
9756768..57070PP_00102;hypothetical protein;phage;PHAGE_Entero_BC611_NC_0180869.93e-61Show info_outline

gi|00000000|ref|MK721194.1| Enterococcus phage vB_EfaS_Ef7.1, complete genome. 58018, gc%: 40.03%

Download details as .txt file:detail.txt file_download

Hypothetical protein

Bacterial, total 1 CDS

#CDS PositionBLAST HitE-ValueSequence
157435..57659PP_00103; hypothetical protein0.0Showinfo_outline

Phage Genes

Bacterial Genes

Phage Regions

GC Skew

GC Content

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Phage Genes

Bacterial Genes

Phage Regions

GC Skew

GC Content

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Click on a region or gene to view details

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