Submission Results

Sequence Name: Not Available

GenBank Accession Number: MIJP01000028.1

Download Results: MIJP01000028.1.PHASTEST.zip

gi|00000000|ref|NC_000000| Brucella melitensis strain Br.m-1252/10-Geo MjBr8.8, whole genome 182747, gc%: 57.05%

Download summary as .txt file:summary.txt file_download

Total:1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
115.2Kbintact1301953574-68835 info_outlinePHAGE_Dinoro_vB_DshS_R5C_NC_041921(5)60.69%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|MIJP01000028.1| Brucella melitensis strain Br.m-1252/10-Geo MjBr8.8, whole genome 182747, gc%: 57.05%

Download details as .txt file:detail.txt file_download

Terminase
Portal protein
Head protein
Phage-like protein
Tail protein
Regulatory protein

intact

Region 1, total 15 CDS

#CDS PositionBLAST HitE-ValueSequence
153574..54833PP_00055;terminase large subunit;phage;PHAGE_Caulob_Sansa_NC_0477567.96e-85Show info_outline
254865..56058PP_00056;portal protein;phage;PHAGE_Geobac_GBK2_NC_0236121.92e-65Show info_outline
356419..57088PP_00058;putative prohead protease;phage;PHAGE_Paraco_Shpa_NC_0418688.44e-14Show info_outline
457110..58384PP_00059;phage major capsid protein;phage;PHAGE_Entero_SfI_NC_0273397.73e-100Show info_outline
558549..59115PP_00060;DNA packaging/head-tail-connector;phage;PHAGE_Brucel_BiPBO1_NC_0312642.28e-13Show info_outline
659112..59450PP_00061;head-tail connector complex protein;phage;PHAGE_Paenib_Yerffej_NC_0487143.44e-17Show info_outline
759572..59979PP_00062;DUF3168 domain-containing protein;phage;PHAGE_Paenib_Tadhana_NC_0486916.15e-08Show info_outline
860020..60433PP_00063;gene transfer aget (GTA) orfg9-like phage major tail protein;phage;PHAGE_Rhodob_RcapNL_NC_0204893.79e-23Show info_outline
960990..61535PP_00065;putative tail tape measure protein;phage;PHAGE_Vibrio_SSP002_NC_0419101.97e-12Show info_outline
1061538..62170PP_00066;tail protein;phage;PHAGE_Rhodob_RcRhea_NC_0289543.68e-57Show info_outline
1162167..63042PP_00067;minor tail protein;phage;PHAGE_Rhodob_RcCronus_NC_0420497.65e-55Show info_outline
1263039..63473PP_00068;GTA-like protein;phage;PHAGE_Dinoro_vB_DshS_R5C_NC_0419215.69e-36Show info_outline
1363477..64664PP_00069;tail protein;phage;PHAGE_Rhodob_RcRhea_NC_0289547.89e-57Show info_outline
1464735..67338PP_00070;tail protein;phage;PHAGE_Rhodob_RcRhea_NC_0289541.6e-120Show info_outline
1568146..68835PP_00073;hybrid sensor histidine kinase - response regulator;phage;PHAGE_Altero_vB_AmeM_PT11_V22_NC_0488478.39e-06Show info_outline

gi|00000000|ref|MIJP01000028.1| Brucella melitensis strain Br.m-1252/10-Geo MjBr8.8, whole genome 182747, gc%: 57.05%

Download details as .txt file:detail.txt file_download

Non phage-like protein
Hypothetical protein
tRNA

Bacterial, total 163 CDS

#CDS PositionBLAST HitE-ValueSequence
11..231PP_00001; IS5 family transposase0.0Showinfo_outline
2362..1480PP_00002; glycosyl transferase family 10.0Showinfo_outline
31538..1906PP_00003; IS5 family transposase0.0Showinfo_outline
42002..2343PP_00004; IS5 family transposase0.0Showinfo_outline
52433..2987PP_00005; transposase0.0Showinfo_outline
63151..3579PP_00006; IS5 family transposase0.0Showinfo_outline
73498..3914PP_00007; IS5 family transposase0.0Showinfo_outline
84739..6094PP_00008; phosphomannomutase0.0Showinfo_outline
96165..7589PP_00009; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase0.0Showinfo_outline
107622..8794PP_00010; mannose-6-phosphate isomerase0.0Showinfo_outline
118877..9986PP_00011; glycosyl transferase family 10.0Showinfo_outline
1210678..12211PP_00012; lactate permease0.0Showinfo_outline
1312232..13233PP_00013; ABC transporter permease0.0Showinfo_outline
1413312..14274PP_00014; ABC transporter substrate-binding protein0.0Showinfo_outline
1514332..15384PP_00015; AP endonuclease0.0Showinfo_outline
1615392..16564PP_00016; oxidoreductase0.0Showinfo_outline
1716606..17913PP_00017; xylose isomerase0.0Showinfo_outline
1817960..19411PP_00018; xylulokinase0.0Showinfo_outline
1919444..20475PP_00019; LacI family transcriptional regulator0.0Showinfo_outline
2020737..21255PP_00020; AraC family transcriptional regulator0.0Showinfo_outline
2121390..21590PP_00021; hypothetical protein0.0Showinfo_outline
2222270..23733PP_00022; betaine-aldehyde dehydrogenase0.0Showinfo_outline
2323885..25567PP_00023; choline dehydrogenase0.0Showinfo_outline
2425570..26166PP_00024; transcriptional regulator BetI0.0Showinfo_outline
2526357..27379PP_00025; asparaginase0.0Showinfo_outline
2627424..27894PP_00026; transcription elongation factor0.0Showinfo_outline
2727891..28280PP_00027; death-on-curing family protein0.0Showinfo_outline
2828277..28507PP_00028; AbrB family transcriptional regulator0.0Showinfo_outline
2928568..29560PP_00029; magnesium transporter CorA0.0Showinfo_outline
3029716..30393PP_00030; GntR family transcriptional regulator0.0Showinfo_outline
3130390..31688PP_00031; MFS transporter0.0Showinfo_outline
3231745..32107PP_00032; hypothetical protein0.0Showinfo_outline
3332443..33954PP_00033; ATP-binding protein0.0Showinfo_outline
3434152..34868PP_00034; hypothetical protein0.0Showinfo_outline
3534927..35169PP_00035; hypothetical protein0.0Showinfo_outline
3635065..35823PP_00036; haloacid dehalogenase, type II0.0Showinfo_outline
3736046..36645PP_00037; superoxide dismutase0.0Showinfo_outline
3836817..37152PP_00038; metallophosphoesterase0.0Showinfo_outline
3937270..39378PP_00039; peptidase S90.0Showinfo_outline
4039951..40379PP_00040; transcriptional regulator0.0Showinfo_outline
4140587..40898PP_00041; cytoplasmic protein0.0Showinfo_outline
4241080..41535PP_00042; hypothetical protein0.0Showinfo_outline
4341532..42305PP_00043; hypothetical protein0.0Showinfo_outline
4442418..43755PP_00044; amidase0.0Showinfo_outline
4543796..44221PP_00045; cysteine desufuration protein SufE0.0Showinfo_outline
4644301..44765PP_00046; hypothetical protein0.0Showinfo_outline
4745056..46885PP_00047; PAS domain-containing sensor histidine kinase0.0Showinfo_outline
4846860..47828PP_00048; peptidoglycan-binding protein0.0Showinfo_outline
4947842..48189PP_00049; hypothetical protein0.0Showinfo_outline
5048200..49258PP_00050; DUF2336 domain-containing protein0.0Showinfo_outline
5149456..49998PP_00051; hypothetical protein0.0Showinfo_outline
5249991..50602PP_00052; DUF1214 domain-containing protein0.0Showinfo_outline
5350609..52783PP_00053; penicillin-binding protein0.0Showinfo_outline
5453123..53635PP_00054; hypothetical protein0.0Showinfo_outline
5568910..70220PP_00074; histidine kinase0.0Showinfo_outline
5670314..70766PP_00075; hypothetical protein0.0Showinfo_outline
5770867..72006PP_00076; c-type cytochrome biogenesis protein CcmI0.0Showinfo_outline
5872003..72500PP_00077; cytochrome c biogenesis protein CcmE0.0Showinfo_outline
5972520..74511PP_00078; c-type cytochrome biogenesis protein CcmF0.0Showinfo_outline
6074508..74984PP_00079; cytochrome C0.0Showinfo_outline
6175126..76667PP_00080; serine peptidase0.0Showinfo_outline
6276761..77468PP_00081; DNA-binding response regulator0.0Showinfo_outline
6377468..78871PP_00082; two-component sensor histidine kinase0.0Showinfo_outline
6478994..81945PP_00083; glutamine-synthetase adenylyltransferase0.0Showinfo_outline
6581990..84101PP_00084; hypothetical protein0.0Showinfo_outline
6684372..86723PP_00085; PAS domain-containing sensor histidine kinase0.0Showinfo_outline
6787114..89765PP_00086; aminopeptidase N0.0Showinfo_outline
6889991..90950PP_00087; hypothetical protein0.0Showinfo_outline
6990955..92211PP_00088; MFS transporter0.0Showinfo_outline
7092373..93245PP_00089; uracil-DNA glycosylase0.0Showinfo_outline
7193634..95325PP_00090; electron transfer flavoprotein-ubiquinone oxidoreductase0.0Showinfo_outline
7295441..96517PP_00091; AP endonuclease0.0Showinfo_outline
7396570..98072PP_00092; AMP nucleosidase0.0Showinfo_outline
7498113..98280PP_00093; hypothetical protein0.0Showinfo_outline
7598277..98444PP_00094; hypothetical protein0.0Showinfo_outline
7698639..99349PP_00095; glutathione S-transferase0.0Showinfo_outline
7799408..99755PP_00096; glycerol-3-phosphate ABC transporter ATP-binding protein0.0Showinfo_outline
7899752..99991PP_00097; hypothetical protein0.0Showinfo_outline
79100261..100518PP_00098; hypothetical protein0.0Showinfo_outline
80100578..101348PP_00099; hypothetical protein0.0Showinfo_outline
81102003..102653PP_00100; antifreeze protein0.0Showinfo_outline
82102698..103072PP_00101; oxidoreductase0.0Showinfo_outline
83103090..104223PP_00102; histidinol-phosphate aminotransferase0.0Showinfo_outline
84104586..105512PP_00103; integrase0.0Showinfo_outline
85105787..106890PP_00104; porin0.0Showinfo_outline
86107071..107161tRNA-Ser0.0Showinfo_outline
87107730..108818PP_00105; porin0.0Showinfo_outline
88108962..109603PP_00106; hypothetical protein0.0Showinfo_outline
89109659..109841PP_00107; hypothetical protein0.0Showinfo_outline
90109920..110576PP_00108; endonuclease0.0Showinfo_outline
91110639..112696PP_00109; lytic transglycosylase0.0Showinfo_outline
92113172..114053PP_00110; 4-hydroxy-tetrahydrodipicolinate synthase0.0Showinfo_outline
93114144..114620PP_00111; SsrA-binding protein0.0Showinfo_outline
94114757..115428PP_00112; uracil-DNA glycosylase0.0Showinfo_outline
95115459..116034PP_00113; NYN domain-containing protein0.0Showinfo_outline
96116431..116832PP_00114; DNA-directed RNA polymerase subunit omega0.0Showinfo_outline
97117073..119325PP_00115; GTP pyrophosphokinase0.0Showinfo_outline
98119333..119911PP_00116; orotate phosphoribosyltransferase0.0Showinfo_outline
99120071..120826PP_00117; Crp/Fnr family transcriptional regulator0.0Showinfo_outline
100121207..122541PP_00118; oxygen-independent coproporphyrinogen III oxidase0.0Showinfo_outline
101122725..123936PP_00119; Fosmidomycin resistance protein0.0Showinfo_outline
102124188..125027PP_00120; AraC family transcriptional regulator0.0Showinfo_outline
103125077..125652PP_00121; hypothetical protein0.0Showinfo_outline
104125649..126053PP_00122; holo-ACP synthase0.0Showinfo_outline
105126164..126946PP_00123; signal peptidase I0.0Showinfo_outline
106126948..127652PP_00124; ribonuclease III0.0Showinfo_outline
107127797..128732PP_00125; GTPase Era0.0Showinfo_outline
108128759..129502PP_00126; DNA repair protein RecO0.0Showinfo_outline
109129480..129989PP_00127; tyrosine protein phosphatase0.0Showinfo_outline
110129986..130606PP_00128; hydrolase0.0Showinfo_outline
111130606..131469PP_00129; aminomethyltransferase0.0Showinfo_outline
112131555..132889PP_00130; dihydroorotase0.0Showinfo_outline
113132938..133702PP_00131; hypothetical protein0.0Showinfo_outline
114133751..134017PP_00132; hypothetical protein0.0Showinfo_outline
115134174..134557PP_00133; TIGR02301 family protein0.0Showinfo_outline
116134637..135080PP_00134; DNA mismatch repair protein MutT0.0Showinfo_outline
117135166..135945PP_00135; hypothetical protein0.0Showinfo_outline
118136000..136614PP_00136; amino acid transporter0.0Showinfo_outline
119136591..136758PP_00137; hydrolase0.0Showinfo_outline
120137125..138645PP_00138; cysteine--tRNA ligase0.0Showinfo_outline
121138664..140277PP_00139; citramalate synthase0.0Showinfo_outline
122140526..141446PP_00140; permease0.0Showinfo_outline
123141579..143312PP_00141; peptidase M240.0Showinfo_outline
124143380..144210PP_00142; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase0.0Showinfo_outline
125144207..145238PP_00143; 4-hydroxythreonine-4-phosphate dehydrogenase PdxA0.0Showinfo_outline
126145303..146259PP_00144; molecular chaperone SurA0.0Showinfo_outline
127146587..148965PP_00145; Organic solvent tolerance protein0.0Showinfo_outline
128148986..150074PP_00146; LPS export ABC transporter permease LptG0.0Showinfo_outline
129150071..151279PP_00147; LPS export ABC transporter permease LptF0.0Showinfo_outline
130151689..153182PP_00148; leucyl aminopeptidase0.0Showinfo_outline
131153254..153703PP_00149; DNA polymerase III subunit chi0.0Showinfo_outline
132153703..154266PP_00150; hypothetical protein0.0Showinfo_outline
133154326..156227PP_00151; glycosyl transferase family 10.0Showinfo_outline
134156270..156782PP_00152; diguanylate cyclase0.0Showinfo_outline
135157011..157433PP_00153; nucleoside-diphosphate kinase0.0Showinfo_outline
136157542..158345PP_00154; hypothetical protein0.0Showinfo_outline
137158581..159072PP_00155; molybdopterin synthase catalytic subunit0.0Showinfo_outline
138159074..159331PP_00156; molybdopterin converting factor subunit 10.0Showinfo_outline
139159336..159920PP_00157; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase0.0Showinfo_outline
140160039..162096PP_00158; excinuclease ABC subunit C0.0Showinfo_outline
141162096..162914PP_00159; short chain dehydrogenase0.0Showinfo_outline
142163253..163894PP_00160; hypothetical protein0.0Showinfo_outline
143163991..164590PP_00161; glutathione S-transferase0.0Showinfo_outline
144164645..165334PP_00162; ribonuclease T0.0Showinfo_outline
145165347..165817PP_00163; hypothetical protein0.0Showinfo_outline
146165900..166772PP_00164; 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ0.0Showinfo_outline
147166928..167773PP_00165; hypothetical protein0.0Showinfo_outline
148167851..169977PP_00166; dehydrogenase0.0Showinfo_outline
149170103..170627PP_00167; hypothetical protein0.0Showinfo_outline
150170803..171420PP_00168; phosphoribosylglycinamide formyltransferase0.0Showinfo_outline
151171417..172496PP_00169; phosphoribosylformylglycinamidine cyclo-ligase0.0Showinfo_outline
152172986..174134PP_00170; AI-2E family transporter0.0Showinfo_outline
153174162..174869PP_00171; hypothetical protein0.0Showinfo_outline
154174866..175735PP_00172; UDP-glucose 4-epimerase0.0Showinfo_outline
155175732..176517PP_00173; hypothetical protein0.0Showinfo_outline
156176590..177294PP_00174; 3-oxoacyl-ACP reductase0.0Showinfo_outline
157177456..177611PP_00175; hypothetical protein0.0Showinfo_outline
158177993..179677PP_00176; lactate permease0.0Showinfo_outline
159179976..180052tRNA-Pro0.0Showinfo_outline
160180211..180516PP_00177; ETC complex I subunit0.0Showinfo_outline
161180614..180690tRNA-Arg0.0Showinfo_outline
162181082..181672PP_00178; hypothetical protein0.0Showinfo_outline
163181893..182504PP_00179; exonuclease0.0Showinfo_outline

Phage Genes

Bacterial Genes

Phage Regions

GC Skew

GC Content

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Phage Genes

Bacterial Genes

Phage Regions

GC Skew

GC Content

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Click on a region or gene to view details

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