Submission Results

Sequence Name: Not Available

GenBank Accession Number: MIJO01000031.1

Download Results: MIJO01000031.1.PHASTEST.zip

gi|00000000|ref|NC_000000| Brucella melitensis strain Br.m-1771/12-Geo MjBr6.8, whole genome 182739, gc%: 57.05%

Download summary as .txt file:summary.txt file_download

Total:1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
115.2Kbintact13019113913-129174 info_outlinePHAGE_Dinoro_vB_DshS_R5C_NC_041921(5)60.69%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|MIJO01000031.1| Brucella melitensis strain Br.m-1771/12-Geo MjBr6.8, whole genome 182739, gc%: 57.05%

Download details as .txt file:detail.txt file_download

Regulatory protein
Tail protein
Phage-like protein
Head protein
Portal protein
Terminase

intact

Region 1, total 15 CDS

#CDS PositionBLAST HitE-ValueSequence
1113913..114602PP_00107;hybrid sensor histidine kinase - response regulator;phage;PHAGE_Altero_vB_AmeM_PT11_V22_NC_0488478.39e-06Show info_outline
2115410..118013PP_00110;tail protein;phage;PHAGE_Rhodob_RcRhea_NC_0289541.6e-120Show info_outline
3118084..119271PP_00111;tail protein;phage;PHAGE_Rhodob_RcRhea_NC_0289547.89e-57Show info_outline
4119275..119709PP_00112;GTA-like protein;phage;PHAGE_Dinoro_vB_DshS_R5C_NC_0419215.69e-36Show info_outline
5119706..120581PP_00113;minor tail protein;phage;PHAGE_Rhodob_RcCronus_NC_0420497.65e-55Show info_outline
6120578..121210PP_00114;tail protein;phage;PHAGE_Rhodob_RcRhea_NC_0289543.68e-57Show info_outline
7121213..121758PP_00115;putative tail tape measure protein;phage;PHAGE_Vibrio_SSP002_NC_0419101.97e-12Show info_outline
8122315..122728PP_00117;gene transfer aget (GTA) orfg9-like phage major tail protein;phage;PHAGE_Rhodob_RcapNL_NC_0204893.79e-23Show info_outline
9122769..123176PP_00118;DUF3168 domain-containing protein;phage;PHAGE_Paenib_Tadhana_NC_0486916.15e-08Show info_outline
10123298..123636PP_00119;head-tail connector complex protein;phage;PHAGE_Paenib_Yerffej_NC_0487143.44e-17Show info_outline
11123633..124199PP_00120;DNA packaging/head-tail-connector;phage;PHAGE_Brucel_BiPBO1_NC_0312642.28e-13Show info_outline
12124364..125638PP_00121;phage major capsid protein;phage;PHAGE_Entero_SfI_NC_0273397.73e-100Show info_outline
13125660..126329PP_00122;putative prohead protease;phage;PHAGE_Paraco_Shpa_NC_0418688.44e-14Show info_outline
14126690..127883PP_00124;portal protein;phage;PHAGE_Geobac_GBK2_NC_0236121.92e-65Show info_outline
15127915..129174PP_00125;terminase large subunit;phage;PHAGE_Caulob_Sansa_NC_0477567.96e-85Show info_outline

gi|00000000|ref|MIJO01000031.1| Brucella melitensis strain Br.m-1771/12-Geo MjBr6.8, whole genome 182739, gc%: 57.05%

Download details as .txt file:detail.txt file_download

Non phage-like protein
Hypothetical protein
tRNA

Bacterial, total 162 CDS

#CDS PositionBLAST HitE-ValueSequence
1244..855PP_00001; exonuclease0.0Showinfo_outline
21076..1666PP_00002; hypothetical protein0.0Showinfo_outline
32058..2134tRNA-Arg0.0Showinfo_outline
42232..2537PP_00003; ETC complex I subunit0.0Showinfo_outline
52696..2772tRNA-Pro0.0Showinfo_outline
63071..4755PP_00004; ABC transporter ATP-binding protein0.0Showinfo_outline
75137..5292PP_00005; hypothetical protein0.0Showinfo_outline
85454..6158PP_00006; 3-oxoacyl-ACP reductase0.0Showinfo_outline
96231..7016PP_00007; hypothetical protein0.0Showinfo_outline
107013..7882PP_00008; UDP-glucose 4-epimerase0.0Showinfo_outline
117879..8586PP_00009; hypothetical protein0.0Showinfo_outline
128614..9762PP_00010; AI-2E family transporter0.0Showinfo_outline
1310252..11331PP_00011; phosphoribosylformylglycinamidine cyclo-ligase0.0Showinfo_outline
1411328..11945PP_00012; phosphoribosylglycinamide formyltransferase0.0Showinfo_outline
1512121..12645PP_00013; hypothetical protein0.0Showinfo_outline
1612771..14897PP_00014; dehydrogenase0.0Showinfo_outline
1714975..15820PP_00015; hypothetical protein0.0Showinfo_outline
1815976..16848PP_00016; 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ0.0Showinfo_outline
1916931..17401PP_00017; hypothetical protein0.0Showinfo_outline
2017414..18103PP_00018; ribonuclease T0.0Showinfo_outline
2118158..18757PP_00019; glutathione S-transferase0.0Showinfo_outline
2218854..19495PP_00020; hypothetical protein0.0Showinfo_outline
2319834..20652PP_00021; short chain dehydrogenase0.0Showinfo_outline
2420652..22709PP_00022; excinuclease ABC subunit C0.0Showinfo_outline
2522828..23412PP_00023; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase0.0Showinfo_outline
2623417..23674PP_00024; molybdopterin converting factor subunit 10.0Showinfo_outline
2723676..24167PP_00025; molybdopterin synthase catalytic subunit0.0Showinfo_outline
2824404..25207PP_00026; hypothetical protein0.0Showinfo_outline
2925315..25737PP_00027; nucleoside-diphosphate kinase0.0Showinfo_outline
3025966..26478PP_00028; diguanylate cyclase0.0Showinfo_outline
3126521..28422PP_00029; glycosyl transferase family 10.0Showinfo_outline
3228482..29045PP_00030; hypothetical protein0.0Showinfo_outline
3329045..29494PP_00031; DNA polymerase III subunit chi0.0Showinfo_outline
3429566..31059PP_00032; leucyl aminopeptidase0.0Showinfo_outline
3531469..32677PP_00033; LPS export ABC transporter permease LptF0.0Showinfo_outline
3632674..33762PP_00034; LPS export ABC transporter permease LptG0.0Showinfo_outline
3733783..36161PP_00035; Organic solvent tolerance protein0.0Showinfo_outline
3836489..37445PP_00036; molecular chaperone SurA0.0Showinfo_outline
3937510..38541PP_00037; 4-hydroxythreonine-4-phosphate dehydrogenase PdxA0.0Showinfo_outline
4038538..39368PP_00038; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase0.0Showinfo_outline
4139436..41169PP_00039; peptidase M240.0Showinfo_outline
4241302..42222PP_00040; permease0.0Showinfo_outline
4342470..44083PP_00041; citramalate synthase0.0Showinfo_outline
4444102..45622PP_00042; cysteine--tRNA ligase0.0Showinfo_outline
4545989..46156PP_00043; hydrolase0.0Showinfo_outline
4646133..46747PP_00044; amino acid transporter0.0Showinfo_outline
4746802..47581PP_00045; hypothetical protein0.0Showinfo_outline
4847667..48110PP_00046; DNA mismatch repair protein MutT0.0Showinfo_outline
4948190..48573PP_00047; TIGR02301 family protein0.0Showinfo_outline
5048730..48996PP_00048; hypothetical protein0.0Showinfo_outline
5149045..49809PP_00049; hypothetical protein0.0Showinfo_outline
5249858..51192PP_00050; dihydroorotase0.0Showinfo_outline
5351278..52141PP_00051; aminomethyltransferase0.0Showinfo_outline
5452141..52761PP_00052; hydrolase0.0Showinfo_outline
5552758..53267PP_00053; tyrosine protein phosphatase0.0Showinfo_outline
5653245..53988PP_00054; DNA repair protein RecO0.0Showinfo_outline
5754015..54950PP_00055; GTPase Era0.0Showinfo_outline
5855095..55799PP_00056; ribonuclease III0.0Showinfo_outline
5955801..56583PP_00057; signal peptidase I0.0Showinfo_outline
6056694..57098PP_00058; holo-ACP synthase0.0Showinfo_outline
6157095..57670PP_00059; hypothetical protein0.0Showinfo_outline
6257720..58559PP_00060; AraC family transcriptional regulator0.0Showinfo_outline
6358811..60022PP_00061; Fosmidomycin resistance protein0.0Showinfo_outline
6460206..61540PP_00062; oxygen-independent coproporphyrinogen III oxidase0.0Showinfo_outline
6561921..62676PP_00063; Crp/Fnr family transcriptional regulator0.0Showinfo_outline
6662836..63414PP_00064; orotate phosphoribosyltransferase0.0Showinfo_outline
6763422..65674PP_00065; GTP pyrophosphokinase0.0Showinfo_outline
6865915..66316PP_00066; DNA-directed RNA polymerase subunit omega0.0Showinfo_outline
6966713..67288PP_00067; NYN domain-containing protein0.0Showinfo_outline
7067319..67990PP_00068; uracil-DNA glycosylase0.0Showinfo_outline
7168127..68603PP_00069; SsrA-binding protein0.0Showinfo_outline
7268694..69575PP_00070; 4-hydroxy-tetrahydrodipicolinate synthase0.0Showinfo_outline
7370051..72108PP_00071; lytic transglycosylase0.0Showinfo_outline
7472171..72827PP_00072; endonuclease0.0Showinfo_outline
7572906..73088PP_00073; hypothetical protein0.0Showinfo_outline
7673144..73785PP_00074; hypothetical protein0.0Showinfo_outline
7773929..75017PP_00075; porin0.0Showinfo_outline
7875586..75676tRNA-Ser0.0Showinfo_outline
7975857..76960PP_00076; porin0.0Showinfo_outline
8077236..78162PP_00077; integrase0.0Showinfo_outline
8178525..79658PP_00078; histidinol-phosphate aminotransferase0.0Showinfo_outline
8279676..80050PP_00079; oxidoreductase0.0Showinfo_outline
8380095..80745PP_00080; antifreeze protein0.0Showinfo_outline
8481400..82170PP_00081; hypothetical protein0.0Showinfo_outline
8582230..82487PP_00082; hypothetical protein0.0Showinfo_outline
8682757..82996PP_00083; hypothetical protein0.0Showinfo_outline
8782993..83340PP_00084; glycerol-3-phosphate ABC transporter ATP-binding protein0.0Showinfo_outline
8883399..84109PP_00085; glutathione S-transferase0.0Showinfo_outline
8984304..84471PP_00086; hypothetical protein0.0Showinfo_outline
9084468..84635PP_00087; hypothetical protein0.0Showinfo_outline
9184676..86178PP_00088; AMP nucleosidase0.0Showinfo_outline
9286231..87307PP_00089; AP endonuclease0.0Showinfo_outline
9387423..89114PP_00090; electron transfer flavoprotein-ubiquinone oxidoreductase0.0Showinfo_outline
9489503..90375PP_00091; uracil-DNA glycosylase0.0Showinfo_outline
9590537..91793PP_00092; MFS transporter0.0Showinfo_outline
9691798..92757PP_00093; hypothetical protein0.0Showinfo_outline
9792983..95634PP_00094; aminopeptidase N0.0Showinfo_outline
9896025..98376PP_00095; PAS domain-containing sensor histidine kinase0.0Showinfo_outline
9998647..100758PP_00096; hypothetical protein0.0Showinfo_outline
100100803..103754PP_00097; glutamine-synthetase adenylyltransferase0.0Showinfo_outline
101103877..105280PP_00098; two-component sensor histidine kinase0.0Showinfo_outline
102105280..105987PP_00099; DNA-binding response regulator0.0Showinfo_outline
103106081..107622PP_00100; serine peptidase0.0Showinfo_outline
104107764..108240PP_00101; cytochrome C0.0Showinfo_outline
105108237..110228PP_00102; c-type cytochrome biogenesis protein CcmF0.0Showinfo_outline
106110248..110745PP_00103; cytochrome c biogenesis protein CcmE0.0Showinfo_outline
107110742..111881PP_00104; c-type cytochrome biogenesis protein CcmI0.0Showinfo_outline
108111982..112434PP_00105; hypothetical protein0.0Showinfo_outline
109112528..113838PP_00106; histidine kinase0.0Showinfo_outline
110129113..129625PP_00126; hypothetical protein0.0Showinfo_outline
111129965..132139PP_00127; penicillin-binding protein0.0Showinfo_outline
112132146..132757PP_00128; DUF1214 domain-containing protein0.0Showinfo_outline
113132750..133292PP_00129; hypothetical protein0.0Showinfo_outline
114133490..134548PP_00130; DUF2336 domain-containing protein0.0Showinfo_outline
115134559..134906PP_00131; hypothetical protein0.0Showinfo_outline
116134920..135888PP_00132; peptidoglycan-binding protein0.0Showinfo_outline
117135863..137692PP_00133; PAS domain-containing sensor histidine kinase0.0Showinfo_outline
118137983..138447PP_00134; hypothetical protein0.0Showinfo_outline
119138527..138952PP_00135; cysteine desufuration protein SufE0.0Showinfo_outline
120138993..140330PP_00136; amidase0.0Showinfo_outline
121140443..141216PP_00137; hypothetical protein0.0Showinfo_outline
122141213..141668PP_00138; hypothetical protein0.0Showinfo_outline
123141850..142161PP_00139; cytoplasmic protein0.0Showinfo_outline
124142369..142797PP_00140; transcriptional regulator0.0Showinfo_outline
125143370..145478PP_00141; peptidase S90.0Showinfo_outline
126145596..145931PP_00142; metallophosphoesterase0.0Showinfo_outline
127146103..146702PP_00143; superoxide dismutase0.0Showinfo_outline
128146925..147683PP_00144; haloacid dehalogenase, type II0.0Showinfo_outline
129147579..147821PP_00145; hypothetical protein0.0Showinfo_outline
130147880..148596PP_00146; hypothetical protein0.0Showinfo_outline
131148794..150305PP_00147; ATP-binding protein0.0Showinfo_outline
132150641..151003PP_00148; hypothetical protein0.0Showinfo_outline
133151060..152358PP_00149; MFS transporter0.0Showinfo_outline
134152355..153032PP_00150; GntR family transcriptional regulator0.0Showinfo_outline
135153188..154180PP_00151; magnesium transporter CorA0.0Showinfo_outline
136154241..154471PP_00152; AbrB family transcriptional regulator0.0Showinfo_outline
137154468..154857PP_00153; death-on-curing family protein0.0Showinfo_outline
138154854..155324PP_00154; transcription elongation factor0.0Showinfo_outline
139155369..156391PP_00155; asparaginase0.0Showinfo_outline
140156582..157178PP_00156; transcriptional regulator BetI0.0Showinfo_outline
141157181..158863PP_00157; choline dehydrogenase0.0Showinfo_outline
142159015..160478PP_00158; betaine-aldehyde dehydrogenase0.0Showinfo_outline
143161158..161358PP_00159; hypothetical protein0.0Showinfo_outline
144161493..162011PP_00160; AraC family transcriptional regulator0.0Showinfo_outline
145162273..163304PP_00161; LacI family transcriptional regulator0.0Showinfo_outline
146163337..164788PP_00162; xylulokinase0.0Showinfo_outline
147164835..166142PP_00163; xylose isomerase0.0Showinfo_outline
148166184..167356PP_00164; oxidoreductase0.0Showinfo_outline
149167364..168416PP_00165; AP endonuclease0.0Showinfo_outline
150168474..169436PP_00166; ABC transporter substrate-binding protein0.0Showinfo_outline
151169515..170516PP_00167; ABC transporter permease0.0Showinfo_outline
152170537..172070PP_00168; ABC transporter ATP-binding protein0.0Showinfo_outline
153172762..173871PP_00169; glycosyl transferase family 10.0Showinfo_outline
154173954..175126PP_00170; mannose-6-phosphate isomerase0.0Showinfo_outline
155175159..176583PP_00171; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase0.0Showinfo_outline
156176654..178009PP_00172; phosphomannomutase0.0Showinfo_outline
157178834..179250PP_00173; IS5 family transposase0.0Showinfo_outline
158179169..179597PP_00174; IS5 family transposase0.0Showinfo_outline
159179761..180315PP_00175; transposase0.0Showinfo_outline
160180405..180746PP_00176; IS5 family transposase0.0Showinfo_outline
161180842..181210PP_00177; IS5 family transposase0.0Showinfo_outline
162181268..182386PP_00178; glycosyl transferase family 10.0Showinfo_outline

Phage Genes

Bacterial Genes

Phage Regions

GC Skew

GC Content

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Phage Genes

Bacterial Genes

Phage Regions

GC Skew

GC Content

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Click on a region or gene to view details

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