Submission Results

Sequence Name: Not Available

GenBank Accession Number: DAFPLO010000018

Download Results: DAFPLO010000018.PHASTEST.zip

gi|00000000|ref|NC_000000| TPA_asm: Pseudomonas aeruginosa strain AUSMDU00029616 117539, gc%: 64.68%

Download summary as .txt file:summary.txt file_download

Total:1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
156.1Kbintact1207551020-107129 info_outlinePHAGE_Pseudo_phi297_NC_016762(26)63.86%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|DAFPLO010000018.1| TPA_asm: Pseudomonas aeruginosa strain AUSMDU00029616 117539, gc%: 64.68%

Download details as .txt file:detail.txt file_download

Regulatory protein
Hypothetical protein
Phage-like protein
Tail protein
Head protein
Terminase
Integrase

intact

Region 1, total 59 CDS

#CDS PositionBLAST HitE-ValueSequence
151020..51916PP_00035;LysR family transcriptional regulator;phage;PHAGE_Klebsi_ST437_OXA245phi4.1_NC_0494486.98e-11Show info_outline
254640..55152PP_00038;hypothetical protein;phage;PHAGE_Pseudo_H66_NC_0423422.91e-110Show info_outline
355193..55879PP_00039;hypothetical protein;phage;PHAGE_Pseudo_F116_NC_0065523.68e-147Show info_outline
455861..56127PP_00040;hypothetical protein;phage;PHAGE_Pseudo_H66_NC_0423423.28e-59Show info_outline
556163..56450PP_00041;hypothetical protein;phage;PHAGE_Pseudo_JBD44_NC_0309291.32e-56Show info_outline
656486..56854PP_00042;hypothetical protein;phage;PHAGE_Pseudo_PMG1_NC_0167651.3e-59Show info_outline
756851..57480PP_00043;lytic enzyme;phage;PHAGE_Pseudo_JBD44_NC_0309296.88e-129Show info_outline
857525..59600PP_00044;putative acetyl transferase;phage;PHAGE_Pseudo_PAJU2_NC_0113732.58e-71Show info_outline
959613..61298PP_00045;putative pectate lyase;phage;PHAGE_Pseudo_O4_NC_0312740.0Show info_outline
1061365..64112PP_00046;tail protein;phage;PHAGE_Pseudo_PS_1_NC_0290660.0Show info_outline
1164078..64491PP_00047;hypothetical protein;phage;PHAGE_Pseudo_PAJU2_NC_0113731.23e-52Show info_outline
1264495..64980PP_00048;hypothetical protein;phage;PHAGE_Pseudo_PAJU2_NC_0113731.94e-44Show info_outline
1364982..65452PP_00049;hypothetical protein;phage;PHAGE_Pseudo_PAJU2_NC_0113737.13e-38Show info_outline
1465452..68733PP_00050;putative tail component protein;phage;PHAGE_Pseudo_MP29_NC_0116134.6e-67Show info_outline
1569626..70795PP_00053;putative major tail protein;phage;PHAGE_Acinet_vB_AbaS_TRS1_NC_0310985.3e-33Show info_outline
1670857..71264PP_00054;putative tail terminator protein;phage;PHAGE_Acinet_vB_AbaS_TRS1_NC_0310982.47e-11Show info_outline
1771261..71656PP_00055;hypothetical protein;phage;PHAGE_Pseudo_phiPSA1_NC_0243651.66e-35Show info_outline
1871656..72030PP_00056;hypothetical protein;phage;PHAGE_Pseudo_phiPSA1_NC_0243657.64e-32Show info_outline
1972035..73027PP_00057;head morphogenesis protein;phage;PHAGE_Sinorh_phiLM21_NC_0290461.07e-51Show info_outline
2073024..73545PP_00058;hypothetical protein;phage;PHAGE_Pseudo_phiPSA1_NC_0243651.61e-45Show info_outline
2174172..75101PP_00060;putative capsid protein;phage;PHAGE_Rhizob_RHEph04_NC_0419084.58e-129Show info_outline
2275111..75566PP_00061;hypothetical protein;phage;PHAGE_Rhizob_RHEph04_NC_0419088.03e-26Show info_outline
2375566..76687PP_00062;putative head protein;phage;PHAGE_Rhizob_RHEph04_NC_0419083.34e-78Show info_outline
2476690..78498PP_00063;putative head protein;phage;PHAGE_Rhizob_RHEph04_NC_0419080.0Show info_outline
2578498..79784PP_00064;putative large terminase subunit;phage;PHAGE_Acinet_vB_AbaS_TRS1_NC_0310980.0Show info_outline
2679771..80367PP_00065;hypothetical protein;phage;PHAGE_Pseudo_YMC11/07/P54_PAE_BP_NC_0309096.64e-69Show info_outline
2780376..80660PP_00066;hypothetical protein;phage;PHAGE_Pseudo_YMC11/07/P54_PAE_BP_NC_0309094.99e-59Show info_outline
2880653..81042PP_00067;hypothetical protein;phage;PHAGE_Pseudo_phi297_NC_0167623.0e-83Show info_outline
2981157..82026PP_00068;hypothetical protein;phage;PHAGE_Pseudo_YMC11/07/P54_PAE_BP_NC_0309090.0Show info_outline
3082055..82498PP_00069;hypothetical protein;phage;PHAGE_Pseudo_YMC11/07/P54_PAE_BP_NC_0309095.02e-102Show info_outline
3185348..86079PP_00076;Putative Cro/CI transcriptional regulator;phage;PHAGE_Pseudo_vB_PaeP_Tr60_Ab31_NC_0235759.53e-79Show info_outline
3287620..87826PP_00078;hypothetical protein;phage;PHAGE_Pseudo_F116_NC_0065525.54e-42Show info_outline
3387881..88093PP_00079;hypothetical protein;phage;PHAGE_Pseudo_H66_NC_0423427.57e-44Show info_outline
3488118..88255PP_00080;hypothetical protein;phage;PHAGE_Pseudo_YMC11/07/P54_PAE_BP_NC_0309092.79e-23Show info_outline
3588272..88535PP_00081;hypothetical protein;phage;PHAGE_Pseudo_phi297_NC_0167621.89e-55Show info_outline
3688584..88955PP_00082;hypothetical protein;phage;PHAGE_Pseudo_YMC11/07/P54_PAE_BP_NC_0309093.57e-83Show info_outline
3789532..89678PP_00083;hypothetical protein;phage;PHAGE_Pseudo_H66_NC_0423421.24e-18Show info_outline
3889662..89883PP_00084;hypothetical protein;phage;PHAGE_Pseudo_phi297_NC_0167628.55e-45Show info_outline
3989880..90062PP_00085;hypothetical protein;phage;PHAGE_Pseudo_D3_NC_0024841.4e-32Show info_outline
4090055..90708PP_00086;hypothetical protein;phage;PHAGE_Deftia_phiW_14_NC_0136978.18e-18Show info_outline
4190692..90829PP_00087;hypothetical protein;phage;PHAGE_Pseudo_YMC11/07/P54_PAE_BP_NC_0309095.12e-24Show info_outline
4290837..91640PP_00088;hypothetical protein;phage;PHAGE_Pseudo_phi297_NC_0167620.0Show info_outline
4391649..91864PP_00089;hypothetical protein;phage;PHAGE_Pseudo_YMC11/07/P54_PAE_BP_NC_0309099.01e-47Show info_outline
4491861..92856PP_00090;hypothetical protein;phage;PHAGE_Pseudo_YMC11/07/P54_PAE_BP_NC_0309090.0Show info_outline
4592863..93063PP_00091;hypothetical protein;phage;PHAGE_Pseudo_YMC11/07/P54_PAE_BP_NC_0309098.17e-42Show info_outline
4693074..93841PP_00092;hypothetical protein;phage;PHAGE_Pseudo_YMC11/07/P54_PAE_BP_NC_0309091.71e-161Show info_outline
4793845..95587PP_00093;hypothetical protein;phage;PHAGE_Pseudo_YMC11/07/P54_PAE_BP_NC_0309090.0Show info_outline
4895744..97174PP_00094;phosphoadenosine phosphosulfate reductase family protein;phage;PHAGE_Pseudo_Dobby_NC_0481090.0Show info_outline
4997190..98968PP_00095;hypothetical protein;phage;PHAGE_Pseudo_phiCTX_NC_0032780.0Show info_outline
5098965..99408PP_00096;hypothetical protein;phage;PHAGE_Pseudo_YMC11/07/P54_PAE_BP_NC_0309092.75e-97Show info_outline
5199405..100046PP_00097;hypothetical protein;phage;PHAGE_Pseudo_F116_NC_0065529.46e-77Show info_outline
52100043..100531PP_00098;DUF1643 containing protein;phage;PHAGE_Stenot_vB_SmaS_DLP_5_NC_0420821.57e-43Show info_outline
53100528..101289PP_00099;hypothetical protein;phage;PHAGE_Pseudo_F116_NC_0065520.0Show info_outline
54101384..101632PP_00100;hypothetical protein;phage;PHAGE_Pseudo_phi297_NC_0167622.7e-54Show info_outline
55101596..101802PP_00101;hypothetical protein;phage;PHAGE_Pseudo_PMG1_NC_0167652.58e-37Show info_outline
56102903..103241PP_00102;hypothetical protein;phage;PHAGE_Pseudo_H66_NC_0423421.71e-31Show info_outline
57103321..103557PP_00103;hypothetical protein;phage;PHAGE_Pseudo_F10_NC_0078051.74e-23Show info_outline
58103559..104626PP_00104;Integrase;phage;PHAGE_Pseudo_F10_NC_0078051.29e-132Show info_outline
59106794..107129PP_00109;sulfur transfer protein, DsrC;phage;PHAGE_Podovi_Lau218_NC_0243291.88e-07Show info_outline

gi|00000000|ref|DAFPLO010000018.1| TPA_asm: Pseudomonas aeruginosa strain AUSMDU00029616 117539, gc%: 64.68%

Download details as .txt file:detail.txt file_download

Non phage-like protein
Hypothetical protein

Bacterial, total 42 CDS

#CDS PositionBLAST HitE-ValueSequence
11..803PP_00001; excinuclease ABC subunit UvrC0.0Showinfo_outline
2804..1448PP_00002; UvrY/SirA/GacA family response regulator transcription factor0.0Showinfo_outline
31790..2938PP_00003; 2-heptyl-3-hydroxy-4(1H)-quinolone synthase0.0Showinfo_outline
43556..4584PP_00004; helix-turn-helix domain-containing protein0.0Showinfo_outline
54600..5814PP_00005; MFS transporter0.0Showinfo_outline
65825..8479PP_00006; TonB-dependent receptor0.0Showinfo_outline
78599..9405PP_00007; helix-turn-helix transcriptional regulator0.0Showinfo_outline
89558..10661PP_00008; polyamine ABC transporter substrate-binding protein0.0Showinfo_outline
910868..11440PP_00009; quorum threshold expression protein QteE0.0Showinfo_outline
1011470..12075PP_00010; hypothetical protein0.0Showinfo_outline
1112143..13588PP_00011; efflux transporter outer membrane subunit0.0Showinfo_outline
1213651..14769PP_00012; ABC transporter permease0.0Showinfo_outline
1314774..15907PP_00013; ABC transporter permease0.0Showinfo_outline
1415920..17689PP_00014; ABC transporter ATP-binding protein0.0Showinfo_outline
1517689..18699PP_00015; HlyD family efflux transporter periplasmic adaptor subunit0.0Showinfo_outline
1618810..19460PP_00016; CerR family C-terminal domain-containing protein0.0Showinfo_outline
1719467..20261PP_00017; thioesterase0.0Showinfo_outline
1820265..21758PP_00018; amino acid adenylation domain-containing protein0.0Showinfo_outline
1921755..22888PP_00019; acyl-CoA/acyl-ACP dehydrogenase0.0Showinfo_outline
2022890..24527PP_00020; halogenase0.0Showinfo_outline
2124583..29802PP_00021; SDR family oxidoreductase0.0Showinfo_outline
2229846..37111PP_00022; type I polyketide synthase0.0Showinfo_outline
2337143..38492PP_00023; tryptophan 7-halogenase0.0Showinfo_outline
2438509..38775PP_00024; acyl carrier protein0.0Showinfo_outline
2539428..40396PP_00025; LysR family transcriptional regulator0.0Showinfo_outline
2640455..41969PP_00026; tryptophan 7-halogenase0.0Showinfo_outline
2742033..43082PP_00027; type III polyketide synthase0.0Showinfo_outline
2843254..44213PP_00028; aliphatic sulfonate ABC transporter substrate-binding protein0.0Showinfo_outline
2944349..45305PP_00029; ABC transporter substrate-binding protein0.0Showinfo_outline
3045317..46303PP_00030; aliphatic sulfonate ABC transporter substrate-binding protein0.0Showinfo_outline
3146411..47562PP_00031; acyl-CoA/acyl-ACP dehydrogenase0.0Showinfo_outline
3247567..48649PP_00032; LLM class flavin-dependent oxidoreductase0.0Showinfo_outline
3348659..49603PP_00033; ABC transporter substrate-binding protein0.0Showinfo_outline
3449613..50680PP_00034; LLM class flavin-dependent oxidoreductase0.0Showinfo_outline
35107126..108109PP_00110; glycosyl transferase family protein0.0Showinfo_outline
36108197..109171PP_00111; glutathione S-transferase family protein0.0Showinfo_outline
37109176..110573PP_00112; uroporphyrinogen-III C-methyltransferase0.0Showinfo_outline
38110575..111855PP_00113; serine--tRNA ligase0.0Showinfo_outline
39111977..113302PP_00114; replication-associated recombination protein A0.0Showinfo_outline
40113312..113938PP_00115; outer membrane lipoprotein chaperone LolA0.0Showinfo_outline
41113964..116399PP_00116; DNA translocase FtsK0.0Showinfo_outline
42116627..117539PP_00117; thioredoxin-disulfide reductase0.0Showinfo_outline

Phage Genes

Bacterial Genes

Phage Regions

GC Skew

GC Content

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Phage Genes

Bacterial Genes

Phage Regions

GC Skew

GC Content

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Click on a region or gene to view details

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