Submission Results

Sequence Name: Not Available

GenBank Accession Number: CP152770.1

Download Results: CP152770.1.PHASTEST.zip

gi|00000000|ref|NC_000000| Klebsiella pneumoniae strain NK_H2_007 plasmid pNK_H2_007.2, 110383, gc%: 49.09%

Download summary as .txt file:summary.txt file_download

Total:1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
192.3Kbintact1509017908-110253 info_outlinePHAGE_Salmon_SSU5_NC_018843(71)49.21%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|CP152770.1| Klebsiella pneumoniae strain NK_H2_007 plasmid pNK_H2_007.2, 110383, gc%: 49.09%

Download details as .txt file:detail.txt file_download

Hypothetical protein
Phage-like protein
Repressor
DNA Helicase
Terminase
Portal protein
Head protein
Tail protein
Fiber protein
Holin
Integrase
Replication protein
Exonuclease

intact

Region 1, total 82 CDS

#CDS PositionBLAST HitE-ValueSequence
117908..19134PP_00025;hypothetical protein;phage;PHAGE_Salmon_SSU5_NC_0188432.38e-157Show info_outline
221183..21482PP_00027;hypothetical protein;phage;PHAGE_Salmon_SSU5_NC_0188431.29e-43Show info_outline
321602..22009PP_00028;Gp62;phage;PHAGE_Klebsi_phiKO2_NC_0058574.05e-31Show info_outline
422621..23103PP_00030;hypothetical protein;phage;PHAGE_Salmon_SSU5_NC_0188439.48e-85Show info_outline
523697..23900PP_00031;putative MIT family metal ion transporter CorA;phage;PHAGE_Salmon_SSU5_NC_0188438.67e-39Show info_outline
623951..24601PP_00032;hypothetical protein;phage;PHAGE_Salmon_SSU5_NC_0188436.43e-145Show info_outline
725235..25765PP_00033;putative repressor of phase 1 flagellin;phage;PHAGE_Salmon_SSU5_NC_0188432.76e-92Show info_outline
825921..26358PP_00034;hypothetical protein;phage;PHAGE_Escher_HK639_NC_0161583.38e-21Show info_outline
926409..26684PP_00035;hypothetical protein;phage;PHAGE_Salmon_SSU5_NC_0188432.01e-39Show info_outline
1026687..28246PP_00036;putative helicase;phage;PHAGE_Salmon_SSU5_NC_0188430.0Show info_outline
1128306..29010PP_00037;putative ParB-like nuclease domain-containing protein;phage;PHAGE_Salmon_SSU5_NC_0188432.63e-145Show info_outline
1229010..29678PP_00038;putative ParB-like nuclease domain-containing protein;phage;PHAGE_Salmon_SSU5_NC_0188431.18e-144Show info_outline
1329675..30313PP_00039;putative ABC transporter ATP-binding protein;phage;PHAGE_Salmon_SSU5_NC_0188435.69e-151Show info_outline
1430306..30560PP_00040;hypothetical protein;phage;PHAGE_Salmon_SSU5_NC_0188431.74e-54Show info_outline
1530566..31456PP_00041;putative ABC transporter ATP-binding protein;phage;PHAGE_Salmon_SSU5_NC_0188430.0Show info_outline
1631466..31732PP_00042;hypothetical protein;phage;PHAGE_Salmon_SSU5_NC_0188431.29e-41Show info_outline
1731908..32549PP_00043;putative DNA-binding protein;phage;PHAGE_Salmon_SSU5_NC_0188432.24e-109Show info_outline
1832552..33808PP_00044;putative terminase large subunit;phage;PHAGE_Salmon_SSU5_NC_0188430.0Show info_outline
1933841..35415PP_00045;putative phage portal protein;phage;PHAGE_Rhizob_RHEph10_NC_0342481.26e-166Show info_outline
2035438..36337PP_00046;hypothetical protein;phage;PHAGE_Salmon_SSU5_NC_0188430.0Show info_outline
2136364..37242PP_00047;putative major capsid protein;phage;PHAGE_Salmon_SSU5_NC_0188430.0Show info_outline
2237321..37749PP_00048;tail assembly protein;phage;PHAGE_Salmon_SE4_NC_0487643.42e-22Show info_outline
2337797..38231PP_00049;hypothetical protein;phage;PHAGE_Salmon_SSU5_NC_0188432.83e-84Show info_outline
2438231..39064PP_00050;hypothetical protein;phage;PHAGE_Salmon_SSU5_NC_0188431.41e-176Show info_outline
2539162..39506PP_00051;hypothetical protein;phage;PHAGE_Salmon_SSU5_NC_0188435.99e-73Show info_outline
2639497..39970PP_00052;putative head-to-tail joining protein;phage;PHAGE_Rhizob_RHEph10_NC_0342481.73e-08Show info_outline
2739972..40364PP_00053;hypothetical protein;phage;PHAGE_Salmon_SSU5_NC_0188433.26e-63Show info_outline
2840432..41178PP_00054;putative tail protein;phage;PHAGE_Rhizob_RHEph10_NC_0342482.06e-24Show info_outline
2941240..41557PP_00055;hypothetical protein;phage;PHAGE_Salmon_SSU5_NC_0188432.75e-64Show info_outline
3041683..41907PP_00056;hypothetical protein;phage;PHAGE_Salmon_SSU5_NC_0188431.2e-42Show info_outline
3141915..46453PP_00057;putative tail tape measure protein;phage;PHAGE_Salmon_SSU5_NC_0188430.0Show info_outline
3246497..46832PP_00058;putative minor tail protein M;phage;PHAGE_Salmon_SSU5_NC_0188433.76e-67Show info_outline
3346919..47617PP_00059;putative minor tail protein L;phage;PHAGE_Salmon_SSU5_NC_0188434.02e-158Show info_outline
3447610..48407PP_00060;putative phage tail protein;phage;PHAGE_Salmon_SSU5_NC_0188434.69e-175Show info_outline
3548395..49006PP_00061;putative phage tail protein;phage;PHAGE_Salmon_SSU5_NC_0188434.78e-112Show info_outline
3649023..52142PP_00062;putative phage tail protein;phage;PHAGE_Salmon_SSU5_NC_0188430.0Show info_outline
3753898..55226PP_00063;Gp21;phage;PHAGE_Klebsi_phiKO2_NC_0058572.58e-21Show info_outline
3855363..61182PP_00064;Gp21;phage;PHAGE_Klebsi_phiKO2_NC_0058574.79e-175Show info_outline
3961235..62734PP_00065;tail fibers protein;phage;PHAGE_Escher_ECA2_NC_0477662.02e-36Show info_outline
4062831..63154PP_00066;putative holin;phage;PHAGE_Salmon_SSU5_NC_0188435.91e-70Show info_outline
4163168..63860PP_00067;putative endolysin;phage;PHAGE_Salmon_SSU5_NC_0188437.93e-156Show info_outline
4263863..64114PP_00068;hypothetical protein;phage;PHAGE_Salmon_SSU5_NC_0188432.95e-34Show info_outline
4364317..64838PP_00069;DNA ligase;phage;PHAGE_Serrat_2050HW_NC_0486683.53e-10Show info_outline
4465078..65743PP_00070;putative ParA family protein;phage;PHAGE_Salmon_SSU5_NC_0188431.4e-131Show info_outline
4565749..66105PP_00071;hypothetical protein;phage;PHAGE_Salmon_SSU5_NC_0188436.66e-63Show info_outline
4666178..66945PP_00072;hypothetical protein;phage;PHAGE_Salmon_SSU5_NC_0188433.51e-26Show info_outline
4766938..67348PP_00073;hypothetical protein;phage;PHAGE_Salmon_SSU5_NC_0188438.66e-28Show info_outline
4867531..68256PP_00074;hypothetical protein;phage;PHAGE_Salmon_SSU5_NC_0188431.67e-162Show info_outline
4968321..69661PP_00075;putative DNA helicase;phage;PHAGE_Salmon_SSU5_NC_0188430.0Show info_outline
5069809..70933PP_00076;putative DNA primase;phage;PHAGE_Salmon_SSU5_NC_0188430.0Show info_outline
5172440..73228PP_00078;hypothetical protein;phage;PHAGE_Salmon_SSU5_NC_0188431.18e-92Show info_outline
5273308..73775PP_00079;hypothetical protein;phage;PHAGE_Salmon_SSU5_NC_0188432.26e-67Show info_outline
5373775..75097PP_00080;putative DNA ligase;phage;PHAGE_Salmon_SSU5_NC_0188430.0Show info_outline
5475109..75273PP_00081;hypothetical protein;phage;PHAGE_Salmon_SSU5_NC_0188432.2e-19Show info_outline
5575257..75472PP_00082;hypothetical protein;phage;PHAGE_Salmon_SSU5_NC_0188432.26e-32Show info_outline
5679162..79935PP_00085;PhoH;phage;PHAGE_Erwini_PhiEaH1_NC_0236101.02e-118Show info_outline
5780066..80311PP_00086;putative glutaredoxin;phage;PHAGE_Pseudo_OBP_NC_0165716.31e-15Show info_outline
5881021..81431PP_00088;hypothetical protein;phage;PHAGE_Escher_HK639_NC_0161586.24e-17Show info_outline
5982205..83305PP_00090;bacteriophage integrase protein;phage;PHAGE_Phage_Gifsy_1_NC_0103922.67e-23Show info_outline
6083300..83680PP_00091;hypothetical protein;phage;PHAGE_Rhizob_RHEph10_NC_0342489.35e-10Show info_outline
6184283..86568PP_00092;putative porphyrin biosynthetic protein;phage;PHAGE_Salmon_SSU5_NC_0188430.0Show info_outline
6286665..87897PP_00093;putative porphyrin biosynthetic protein;phage;PHAGE_Salmon_SSU5_NC_0188430.0Show info_outline
6388078..91596PP_00094;DNA polymerase III alpha subunit;phage;PHAGE_Salmon_SSU5_NC_0188430.0Show info_outline
6491611..92036PP_00095;hypothetical protein;phage;PHAGE_Salmon_SSU5_NC_0188431.99e-82Show info_outline
6592276..92656PP_00096;hypothetical protein;phage;PHAGE_Entero_mEp460_NC_0197161.19e-58Show info_outline
6693123..93554PP_00098;hypothetical protein;phage;PHAGE_Salmon_SSU5_NC_0188431.05e-90Show info_outline
6793674..94681PP_00099;hypothetical protein;phage;PHAGE_Salmon_SSU5_NC_0188430.0Show info_outline
6894742..95686PP_00100;DNA polymerase I;phage;PHAGE_Salmon_SSU5_NC_0188430.0Show info_outline
6995686..95952PP_00101;hypothetical protein;phage;PHAGE_Salmon_SSU5_NC_0188433.33e-49Show info_outline
7095955..97031PP_00102;putative RecA-like recombinase;phage;PHAGE_Salmon_SSU5_NC_0188430.0Show info_outline
7197202..97378PP_00103;hypothetical protein;phage;PHAGE_Salmon_SSU5_NC_0188431.24e-16Show info_outline
7297741..98076PP_00104;hypothetical protein;phage;PHAGE_Salmon_SSU5_NC_0188433.68e-46Show info_outline
7398076..98288PP_00105;putative Cre-associated protein;phage;PHAGE_Salmon_SSU5_NC_0188431.92e-36Show info_outline
7498740..99957PP_00106;putative replication protein RepA;phage;PHAGE_Salmon_SSU5_NC_0188437.67e-98Show info_outline
75100158..100802PP_00107;hypothetical protein;phage;PHAGE_Salmon_SSU5_NC_0188431.35e-126Show info_outline
76101116..102675PP_00108;gp19;phage;PHAGE_Entero_ES18_NC_0069494.2e-92Show info_outline
77103328..104413PP_00109;putative exonuclease subunit 1;phage;PHAGE_Salmon_SSU5_NC_0188430.0Show info_outline
78104413..104646PP_00110;hypothetical protein;phage;PHAGE_Salmon_SSU5_NC_0188439.39e-25Show info_outline
79104643..106559PP_00111;putative exonuclease subunit 2;phage;PHAGE_Salmon_SSU5_NC_0188430.0Show info_outline
80106585..107295PP_00112;hypothetical protein;phage;PHAGE_Salmon_SSU5_NC_0188432.33e-95Show info_outline
81107305..107874PP_00113;putative ribonuclease H-like domain-containing protein;phage;PHAGE_Salmon_SSU5_NC_0188431.11e-127Show info_outline
82107950..110253PP_00114;putative ribonucleotide-diphosphate reductase, alpha subunit;phage;PHAGE_Salmon_SSU5_NC_0188430.0Show info_outline

gi|00000000|ref|CP152770.1| Klebsiella pneumoniae strain NK_H2_007 plasmid pNK_H2_007.2, 110383, gc%: 49.09%

Download details as .txt file:detail.txt file_download

Non phage-like protein
Hypothetical protein
phage N-6-adenine-methyltransferase
phage tail protein

Bacterial, total 24 CDS

#CDS PositionBLAST HitE-ValueSequence
11..1143PP_00001; class Ia ribonucleoside-diphosphate reductase subunit beta0.0Showinfo_outline
21221..2096PP_00002; nucleoside triphosphate pyrophosphohydrolase family protein0.0Showinfo_outline
32290..3393PP_00003; thymidylate synthase0.0Showinfo_outline
43413..3808PP_00004; hypothetical protein0.0Showinfo_outline
53811..4281PP_00005; dihydrofolate reductase0.0Showinfo_outline
64281..4925PP_00006; AAA family ATPase0.0Showinfo_outline
74989..5408PP_00007; hypothetical protein0.0Showinfo_outline
85418..5975PP_00008; 3'-5' exonuclease0.0Showinfo_outline
96101..6934PP_00009; hypothetical protein0.0Showinfo_outline
107119..7712PP_00010; phage N-6-adenine-methyltransferase;phage N-6-adenine-methyltransferase0.0Showinfo_outline
117910..8143PP_00011; hypothetical protein0.0Showinfo_outline
128716..9303PP_00012; ribonuclease HI0.0Showinfo_outline
139461..10000PP_00013; hypothetical protein0.0Showinfo_outline
1410301..10726PP_00014; tellurite/colicin resistance protein0.0Showinfo_outline
1510726..10881PP_00015; DUF3927 family protein0.0Showinfo_outline
1611009..11587PP_00016; hypothetical protein0.0Showinfo_outline
1711716..13401PP_00017; DUF4942 domain-containing protein0.0Showinfo_outline
1813463..14191PP_00018; hypothetical protein0.0Showinfo_outline
1914343..14606PP_00019; hypothetical protein0.0Showinfo_outline
2014853..15212PP_00020; DUF6404 family protein0.0Showinfo_outline
2115486..15914PP_00021; GFA family protein0.0Showinfo_outline
2216059..16805PP_00022; NYN domain-containing protein0.0Showinfo_outline
2316977..17161PP_00023; phage tail protein;phage tail protein0.0Showinfo_outline
2417420..17737PP_00024; hypothetical protein0.0Showinfo_outline

Phage Genes

Bacterial Genes

Phage Regions

GC Skew

GC Content

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Phage Genes

Bacterial Genes

Phage Regions

GC Skew

GC Content

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Click on a region or gene to view details

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