Submission Results

Sequence Name: Not Available

GenBank Accession Number: CP039289.1

Download Results: CP039289.1.PHASTEST.zip

gi|00000000|ref|NC_000000| Cupriavidus necator H16 plasmid pHG1, complete sequence. 452139, gc%: 62.31%

Download summary as .txt file:summary.txt file_download

Total:1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
128.8Kbintact1503029641-58475 info_outlinePHAGE_Burkho_Bcep22_NC_005262(1)59.00%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|CP039289.1| Cupriavidus necator H16 plasmid pHG1, complete sequence. 452139, gc%: 62.31%

Download details as .txt file:detail.txt file_download

Transposase
Integrase

intact

Region 1, total 19 CDS

#CDS PositionBLAST HitE-ValueSequence
129641..30832PP_00029;ISSod1, transposase OrfA;phage;PROPHAGE_Shewan_MR-12.79e-11Show info_outline
232075..33313PP_00032;tyrosine-type recombinase/integrase;phage;PHAGE_Bacill_vB_BtS_BMBtp14_NC_0486408.78e-12Show info_outline
333310..34254PP_00033;integrase;phage;PHAGE_Lactob_phiJB_NC_0227756.65e-09Show info_outline
434251..35249PP_00034;tyrosine-type recombinase/integrase;phage;PHAGE_Bacill_vB_BtS_BMBtp14_NC_0486402.7e-15Show info_outline
536086..37084PP_00037;tyrosine-type recombinase/integrase;phage;PHAGE_Bacill_vB_BtS_BMBtp14_NC_0486409.24e-16Show info_outline
637081..38025PP_00038;integrase;phage;PHAGE_Lactob_phiJB_NC_0227751.74e-08Show info_outline
738022..39260PP_00039;integrase;phage;PHAGE_Mycoba_Rem711_NC_0517259.39e-11Show info_outline
839414..40640PP_00040;transposase IRSO15-like;phage;PHAGE_Ralsto_RSA1_NC_0093821.14e-32Show info_outline
940646..41500PP_00041;integrase;phage;PHAGE_Mycoba_SirDuracell_NC_0419872.67e-14Show info_outline
1041497..42429PP_00042;integrase;phage;PHAGE_Mycoba_Eureka_NC_0418501.98e-07Show info_outline
1142426..43658PP_00043;tyrosine-type recombinase/integrase;phage;PHAGE_Bacill_vB_BtS_BMBtp14_NC_0486407.12e-16Show info_outline
1244269..45516PP_00045;integrase;phage;PHAGE_Mycoba_32HC_NC_0236024.58e-15Show info_outline
1346356..46907PP_00048;IS903 transposase;phage;PHAGE_Entero_HK022_NC_0021664.9e-35Show info_outline
1451476..52738PP_00053;tyrosine-type recombinase/integrase;phage;PHAGE_Bacill_vB_BtS_BMBtp14_NC_0486401.53e-09Show info_outline
1552731..53714PP_00054;integrase;phage;PHAGE_Salini_M8CRM_1_NC_0423518.92e-07Show info_outline
1653711..54721PP_00055;integrase;phage;PHAGE_Gordon_Utz_NC_0309219.48e-14Show info_outline
1754856..56202PP_00056;integrase/recombinase;phage;PROPHAGE_Xantho_3067.71e-36Show info_outline
1856290..56697PP_00057;transposase;phage;PHAGE_Salmon_SJ46_NC_0311291.1e-28Show info_outline
1957761..58475PP_00058;ISBmu23 transposase;phage;PHAGE_Burkho_KS5_NC_0152653.74e-86Show info_outline

gi|00000000|ref|CP039289.1| Cupriavidus necator H16 plasmid pHG1, complete sequence. 452139, gc%: 62.31%

Download details as .txt file:detail.txt file_download

Non phage-like protein
Hypothetical protein
tRNA
phage Gp37/Gp68 family protein

Bacterial, total 416 CDS

#CDS PositionBLAST HitE-ValueSequence
1115..1197PP_00001; twin-arginine translocation signal domain-containing protein0.0Showinfo_outline
21236..3092PP_00002; nickel-dependent hydrogenase large subunit0.0Showinfo_outline
33170..3892PP_00003; Ni/Fe-hydrogenase, b-type cytochrome subunit0.0Showinfo_outline
44213..4890PP_00004; HyaD/HybD family hydrogenase maturation endopeptidase0.0Showinfo_outline
54900..5223PP_00005; HypC/HybG/HupF family hydrogenase formation chaperone0.0Showinfo_outline
65234..5719PP_00006; hydrogenase expression/formation protein HoxO0.0Showinfo_outline
75751..6599PP_00007; hydrogenase expression/formation protein0.0Showinfo_outline
86596..6832PP_00008; rubredoxin0.0Showinfo_outline
96845..7384PP_00009; [NiFe]-hydrogenase assembly, chaperone, HybE0.0Showinfo_outline
107381..8532PP_00010; hydrogenase expression/formation protein HoxV0.0Showinfo_outline
118525..8884PP_00011; hydrogenase maturation nickel metallochaperone HypA0.0Showinfo_outline
128947..10032PP_00012; hydrogenase accessory protein HypB0.0Showinfo_outline
1310034..11218PP_00013; carbamoyltransferase HypF0.0Showinfo_outline
1411209..11481PP_00014; HypC/HybG/HupF family hydrogenase formation chaperone0.0Showinfo_outline
1511478..12617PP_00015; hydrogenase formation protein HypD0.0Showinfo_outline
1612614..13669PP_00016; hydrogenase expression/formation protein HypE0.0Showinfo_outline
1713681..15474PP_00017; hydrogenase maturation protein0.0Showinfo_outline
1815478..16926PP_00018; sigma-54-dependent Fis family transcriptional regulator0.0Showinfo_outline
1916971..17966PP_00019; HupU protein0.0Showinfo_outline
2017976..19433PP_00020; HupV protein0.0Showinfo_outline
2119533..20933PP_00021; PAS domain-containing protein0.0Showinfo_outline
2221335..22390PP_00022; HoxN/HupN/NixA family nickel/cobalt transporter0.0Showinfo_outline
2322933..23466PP_00023; LysR family transcriptional regulator0.0Showinfo_outline
2423973..25228PP_00024; LysR family transcriptional regulator0.0Showinfo_outline
2525302..25745PP_00025; LysR family transcriptional regulator0.0Showinfo_outline
2625947..26612PP_00026; hypothetical protein0.0Showinfo_outline
2726650..28839PP_00027; TonB-dependent receptor0.0Showinfo_outline
2829266..29607PP_00028; LysR family transcriptional regulator0.0Showinfo_outline
2958601..59635PP_00059; HoxN/HupN/NixA family nickel/cobalt transporter0.0Showinfo_outline
3059962..61017PP_00060; hydrogenase expression protein HypE0.0Showinfo_outline
3161055..62866PP_00061; hydrogenase0.0Showinfo_outline
3262866..63444PP_00062; NifU family protein0.0Showinfo_outline
3363441..64103PP_00063; hypothetical protein0.0Showinfo_outline
3464096..64743PP_00064; hypothetical protein0.0Showinfo_outline
3564740..66170PP_00065; hypothetical protein0.0Showinfo_outline
3666167..66718PP_00066; hydrogenase maturation protease0.0Showinfo_outline
3766884..69343PP_00067; carbamoyltransferase HypF0.0Showinfo_outline
3869334..69621PP_00068; HypC/HybG/HupF family hydrogenase formation chaperone0.0Showinfo_outline
3969693..70382PP_00069; SIS domain-containing protein0.0Showinfo_outline
4070379..71590PP_00070; hydrogenase formation protein HypD0.0Showinfo_outline
4171583..72650PP_00071; hydrogenase expression/formation protein HypE0.0Showinfo_outline
4272687..73016PP_00072; hydrogenase maturation nickel metallochaperone HypA0.0Showinfo_outline
4373016..74032PP_00073; hydrogenase accessory protein HypB0.0Showinfo_outline
4474223..74510PP_00074; hypothetical protein0.0Showinfo_outline
4574465..75957PP_00075; LysR family transcriptional regulator0.0Showinfo_outline
4676062..76712PP_00076; hypothetical protein0.0Showinfo_outline
4777083..78020PP_00077; LysR family transcriptional regulator0.0Showinfo_outline
4877686..78219PP_00078; hypothetical protein0.0Showinfo_outline
4978262..79004PP_00079; LysR family transcriptional regulator0.0Showinfo_outline
5079011..79250PP_00080; LysR family transcriptional regulator0.0Showinfo_outline
5179712..81520PP_00081; NAD-reducing hydrogenase HoxS subunit alpha0.0Showinfo_outline
5281517..82221PP_00082; NAD-reducing hydrogenase HoxS subunit gamma0.0Showinfo_outline
5382272..82847PP_00083; NADP oxidoreductase0.0Showinfo_outline
5482865..84331PP_00084; NAD-reducing hydrogenase HoxS subunit beta0.0Showinfo_outline
5584315..84812PP_00085; hydrogenase maturation protease0.0Showinfo_outline
5684835..85338PP_00086; cyclic nucleotide-binding domain-containing protein0.0Showinfo_outline
5785449..85790PP_00087; hydrogenase maturation nickel metallochaperone HypA0.0Showinfo_outline
5885836..86798PP_00088; hydrogenase nickel incorporation protein HypB0.0Showinfo_outline
5986804..89227PP_00089; carbamoyltransferase HypF0.0Showinfo_outline
6089242..89373PP_00090; hypothetical protein0.0Showinfo_outline
6189391..90581PP_00091; hypothetical protein0.0Showinfo_outline
6290940..91158PP_00092; hypothetical protein0.0Showinfo_outline
6391518..92753PP_00093; integrase0.0Showinfo_outline
6493048..94274PP_00094; ISL3-like element ISAe1 family transposase0.0Showinfo_outline
6594361..96364PP_00095; hypothetical protein0.0Showinfo_outline
6696368..97348PP_00096; ATP-binding protein0.0Showinfo_outline
6797350..98792PP_00097; hypothetical protein0.0Showinfo_outline
6899042..100253PP_00098; DNA-binding protein0.0Showinfo_outline
69100237..100506PP_00099; H-NS histone family protein0.0Showinfo_outline
70100712..101125PP_00100; LysR family transcriptional regulator0.0Showinfo_outline
71101129..102226PP_00101; hypothetical protein0.0Showinfo_outline
72102223..102755PP_00102; LysR family transcriptional regulator0.0Showinfo_outline
73103075..104100PP_00103; ATP-binding protein0.0Showinfo_outline
74104078..106576PP_00104; S8 family peptidase0.0Showinfo_outline
75106905..107963PP_00105; GNAT family N-acetyltransferase0.0Showinfo_outline
76109829..110077PP_00106; hypothetical protein0.0Showinfo_outline
77110403..110738PP_00107; hypothetical protein0.0Showinfo_outline
78110971..111615PP_00108; DUF1326 domain-containing protein0.0Showinfo_outline
79111612..112400PP_00109; DUF2182 domain-containing protein0.0Showinfo_outline
80112443..112670PP_00110; hypothetical protein0.0Showinfo_outline
81113703..115601PP_00111; potassium transporter Kup0.0Showinfo_outline
82115919..116141PP_00112; LysR family transcriptional regulator0.0Showinfo_outline
83116161..116922PP_00113; siderophore biosynthesis protein SbnG0.0Showinfo_outline
84116909..118153PP_00114; type III PLP-dependent enzyme0.0Showinfo_outline
85118150..119976PP_00115; iron transporter0.0Showinfo_outline
86120023..121198PP_00116; MFS transporter0.0Showinfo_outline
87121195..123012PP_00117; siderophore biosynthesis protein0.0Showinfo_outline
88123009..124214PP_00118; ATP-grasp domain-containing protein0.0Showinfo_outline
89124402..126525PP_00119; TonB-dependent siderophore receptor0.0Showinfo_outline
90126956..127276PP_00120; hypothetical protein0.0Showinfo_outline
91127980..128207PP_00121; LysR family transcriptional regulator0.0Showinfo_outline
92128344..129576PP_00122; integrase0.0Showinfo_outline
93129573..130520PP_00123; integrase0.0Showinfo_outline
94130517..131302PP_00124; LysR family transcriptional regulator0.0Showinfo_outline
95131433..132671PP_00125; integrase0.0Showinfo_outline
96132668..133612PP_00126; integrase0.0Showinfo_outline
97133609..134607PP_00127; integrase0.0Showinfo_outline
98134719..135504PP_00128; LysR family transcriptional regulator0.0Showinfo_outline
99135501..136447PP_00129; LysR family transcriptional regulator0.0Showinfo_outline
100136444..137676PP_00130; integrase0.0Showinfo_outline
101137741..139189PP_00131; IS66 family transposase0.0Showinfo_outline
102139221..139571PP_00132; IS66 family insertion sequence hypothetical protein0.0Showinfo_outline
103139763..142702PP_00133; Tn3-like element IS882 family transposase0.0Showinfo_outline
104142974..143639PP_00134; LysR family transcriptional regulator0.0Showinfo_outline
105144003..144761PP_00135; DUF3644 domain-containing protein0.0Showinfo_outline
106144889..145659PP_00136; hypothetical protein0.0Showinfo_outline
107145992..146924PP_00137; hypothetical protein0.0Showinfo_outline
108147473..149188PP_00138; DUF2813 domain-containing protein0.0Showinfo_outline
109149181..150599PP_00139; DNA helicase UvrD0.0Showinfo_outline
110150715..150918PP_00140; hypothetical protein0.0Showinfo_outline
111150991..151518PP_00141; hypothetical protein0.0Showinfo_outline
112151723..151973PP_00142; LysR family transcriptional regulator0.0Showinfo_outline
113152230..152982PP_00143; hypothetical protein0.0Showinfo_outline
114152979..153866PP_00144; hypothetical protein0.0Showinfo_outline
115154252..154719PP_00145; hypothetical protein0.0Showinfo_outline
116154864..155187PP_00146; hypothetical protein0.0Showinfo_outline
117155259..155744PP_00147; hypothetical protein0.0Showinfo_outline
118156087..156781PP_00148; LysR family transcriptional regulator0.0Showinfo_outline
119156765..157028PP_00149; H-NS histone family protein0.0Showinfo_outline
120157333..157743PP_00150; IS66 family insertion sequence hypothetical protein0.0Showinfo_outline
121157740..158087PP_00151; IS66 family insertion sequence hypothetical protein0.0Showinfo_outline
122158118..159671PP_00152; IS66-like element IS883 family transposase0.0Showinfo_outline
123159635..160954PP_00153; hypothetical protein0.0Showinfo_outline
124161310..162182PP_00154; hypothetical protein0.0Showinfo_outline
125162814..165084PP_00155; hypothetical protein0.0Showinfo_outline
126165092..166231PP_00156; hypothetical protein0.0Showinfo_outline
127166450..166623PP_00157; LysR family transcriptional regulator0.0Showinfo_outline
128166939..168393PP_00158; hypothetical protein0.0Showinfo_outline
129168814..169026PP_00159; LysR family transcriptional regulator0.0Showinfo_outline
130169033..174849PP_00160; serine protease0.0Showinfo_outline
131174861..176033PP_00161; MBL fold metallo-hydrolase0.0Showinfo_outline
132176173..176475PP_00162; hypothetical protein0.0Showinfo_outline
133176707..178608PP_00163; ATP-dependent helicase0.0Showinfo_outline
134178611..180581PP_00164; DUF2813 domain-containing protein0.0Showinfo_outline
135181101..182246PP_00165; hypothetical protein0.0Showinfo_outline
136182767..183342PP_00166; DUF1294 domain-containing protein0.0Showinfo_outline
137183572..184516PP_00167; DNA topoisomerase0.0Showinfo_outline
138184949..185641PP_00168; hypothetical protein0.0Showinfo_outline
139186520..186789PP_00169; type II toxin-antitoxin system ParD family antitoxin0.0Showinfo_outline
140186786..187091PP_00170; type II toxin-antitoxin system RelE/ParE family toxin0.0Showinfo_outline
141187328..187576PP_00171; hypothetical protein0.0Showinfo_outline
142187716..187997PP_00172; hypothetical protein0.0Showinfo_outline
143188351..188779PP_00173; hypothetical protein0.0Showinfo_outline
144189015..190037PP_00174; hypothetical protein0.0Showinfo_outline
145190056..192734PP_00175; DEAD/DEAH box helicase0.0Showinfo_outline
146193384..193842PP_00176; fumarate hydratase0.0Showinfo_outline
147194007..194094tRNA-Met0.0Showinfo_outline
148194534..195627PP_00177; LysR family transcriptional regulator0.0Showinfo_outline
149195856..196053PP_00178; hypothetical protein0.0Showinfo_outline
150196964..197275PP_00179; H-NS histone family protein0.0Showinfo_outline
151197350..197667PP_00180; hypothetical protein0.0Showinfo_outline
152198473..198961PP_00181; hypothetical protein0.0Showinfo_outline
153199554..199931PP_00182; PHA-granule associated protein 40.0Showinfo_outline
154200354..201064PP_00183; metallophosphoesterase0.0Showinfo_outline
155201719..202414PP_00184; nucleotidyl transferase AbiEii/AbiGii toxin family protein0.0Showinfo_outline
156202411..202914PP_00185; transcriptional regulator0.0Showinfo_outline
157203181..203477PP_00186; type II toxin-antitoxin system RelB/DinJ family antitoxin0.0Showinfo_outline
158203773..204914PP_00187; LysR family transcriptional regulator0.0Showinfo_outline
159204985..208305PP_00188; helicase0.0Showinfo_outline
160208728..209000PP_00189; type II toxin-antitoxin system Phd/YefM family antitoxin0.0Showinfo_outline
161208994..209419PP_00190; type II toxin-antitoxin system VapC family toxin0.0Showinfo_outline
162210429..211646PP_00191; site-specific integrase0.0Showinfo_outline
163211649..213181PP_00192; site-specific integrase0.0Showinfo_outline
164213262..213792PP_00193; LysR family transcriptional regulator0.0Showinfo_outline
165213785..214264PP_00194; hypothetical protein0.0Showinfo_outline
166214376..214876PP_00195; hypothetical protein0.0Showinfo_outline
167215213..215641PP_00196; DUF2384 domain-containing protein0.0Showinfo_outline
168215641..216108PP_00197; RES domain-containing protein0.0Showinfo_outline
169216337..216843PP_00198; hypothetical protein0.0Showinfo_outline
170216840..217166PP_00199; hypothetical protein0.0Showinfo_outline
171217081..217344PP_00200; hypothetical protein0.0Showinfo_outline
172217290..217664PP_00201; PHA-granule associated protein 40.0Showinfo_outline
173217862..218112PP_00202; LysR family transcriptional regulator0.0Showinfo_outline
174218449..219021PP_00203; AraC family transcriptional regulator0.0Showinfo_outline
175219385..219572PP_00204; LysR family transcriptional regulator0.0Showinfo_outline
176219721..219909PP_00205; hypothetical protein0.0Showinfo_outline
177220077..220441PP_00206; LysR family transcriptional regulator0.0Showinfo_outline
178220763..221974PP_00207; NO-inducible flavohemoprotein0.0Showinfo_outline
179222287..222446PP_00208; LysR family transcriptional regulator0.0Showinfo_outline
180222454..222669PP_00209; LysR family transcriptional regulator0.0Showinfo_outline
181222886..223046PP_00210; LysR family transcriptional regulator0.0Showinfo_outline
182223503..223754PP_00211; hypothetical protein0.0Showinfo_outline
183223901..224467PP_00212; phasin family protein0.0Showinfo_outline
184224529..224648PP_00213; LysR family transcriptional regulator0.0Showinfo_outline
185224675..225355PP_00214; FAD-binding protein0.0Showinfo_outline
186225603..225959PP_00215; hypothetical protein0.0Showinfo_outline
187226324..226524PP_00216; hypothetical protein0.0Showinfo_outline
188226858..227255PP_00217; LysR family transcriptional regulator0.0Showinfo_outline
189227603..227767PP_00218; periplasmic nitrate reductase, NapE protein0.0Showinfo_outline
190227843..228172PP_00219; glutamate synthase0.0Showinfo_outline
191228153..230648PP_00220; periplasmic nitrate reductase subunit alpha0.0Showinfo_outline
192230680..231189PP_00221; nitrate reductase cytochrome c-type subunit0.0Showinfo_outline
193231211..231798PP_00222; cytochrome C0.0Showinfo_outline
194231874..232485PP_00223; cytochrome c biogenesis heme-transporting ATPase CcmA0.0Showinfo_outline
195232482..233159PP_00224; heme exporter protein CcmB0.0Showinfo_outline
196233156..233956PP_00225; heme ABC transporter permease0.0Showinfo_outline
197233953..234093PP_00226; heme exporter protein CcmD0.0Showinfo_outline
198234090..234557PP_00227; cytochrome c maturation protein CcmE0.0Showinfo_outline
199234554..236569PP_00228; heme lyase CcmF/NrfE family subunit0.0Showinfo_outline
200236566..237108PP_00229; DsbE family thiol:disulfide interchange protein0.0Showinfo_outline
201237101..237589PP_00230; cytochrome c-type biogenesis protein CcmH0.0Showinfo_outline
202237586..238833PP_00231; c-type cytochrome biogenesis protein CcmI0.0Showinfo_outline
203239334..240560PP_00232; acyl-CoA dehydrogenase0.0Showinfo_outline
204241140..241426PP_00233; LysR family transcriptional regulator0.0Showinfo_outline
205241746..242084PP_00234; hypothetical protein0.0Showinfo_outline
206242023..243550PP_00235; LysR family transcriptional regulator0.0Showinfo_outline
207243674..244923PP_00236; LysR family transcriptional regulator0.0Showinfo_outline
208245111..245566PP_00237; universal stress protein0.0Showinfo_outline
209245600..246602PP_00238; LysR family transcriptional regulator0.0Showinfo_outline
210246622..247965PP_00239; phosphoribosyltransferase0.0Showinfo_outline
211248555..248812PP_00240; LysR family transcriptional regulator0.0Showinfo_outline
212249124..249636PP_00241; hemerythrin domain-containing protein0.0Showinfo_outline
213249770..250069PP_00242; DUF2249 domain-containing protein0.0Showinfo_outline
214250466..250912PP_00243; Rrf2 family transcriptional regulator0.0Showinfo_outline
215251016..252056PP_00244; LysR family transcriptional regulator0.0Showinfo_outline
216252107..252460PP_00245; metal-sulfur cluster assembly factor0.0Showinfo_outline
217252570..253289PP_00246; anaerobic ribonucleoside-triphosphate reductase activating protein0.0Showinfo_outline
218253273..253473PP_00247; hypothetical protein0.0Showinfo_outline
219253616..255646PP_00248; ribonucleoside triphosphate reductase0.0Showinfo_outline
220255788..256675PP_00249; LysR family transcriptional regulator0.0Showinfo_outline
221256893..259181PP_00250; nitric-oxide reductase large subunit0.0Showinfo_outline
222259228..259911PP_00251; iron-sulfur cluster repair protein YtfE0.0Showinfo_outline
223260071..261606PP_00252; nitric oxide reductase transcriptional regulator NorR0.0Showinfo_outline
224261623..262150PP_00253; nitrous oxide reductase accessory protein NosL0.0Showinfo_outline
225262147..262962PP_00254; ABC transporter permease0.0Showinfo_outline
226262974..263897PP_00255; ABC transporter ATP-binding protein0.0Showinfo_outline
227263872..265119PP_00256; nitrous oxide reductase family maturation protein NosD0.0Showinfo_outline
228265176..267797PP_00257; regulatory protein NosR0.0Showinfo_outline
229267859..269790PP_00258; nitrous-oxide reductase0.0Showinfo_outline
230270032..270400PP_00259; cytochrome c5 family protein0.0Showinfo_outline
231270410..271438PP_00260; FAD:protein FMN transferase0.0Showinfo_outline
232271517..271960PP_00261; SCP2 domain-containing protein0.0Showinfo_outline
233271957..272886PP_00262; U32 family peptidase0.0Showinfo_outline
234272941..273894PP_00263; U32 family peptidase0.0Showinfo_outline
235274237..275415PP_00264; nitronate monooxygenase0.0Showinfo_outline
236275592..276041PP_00265; zinc-binding protein0.0Showinfo_outline
237276257..277045PP_00266; SDR family oxidoreductase0.0Showinfo_outline
238277085..277771PP_00267; Crp/Fnr family transcriptional regulator0.0Showinfo_outline
239277764..279101PP_00268; hypothetical protein0.0Showinfo_outline
240279145..279570PP_00269; hemerythrin domain-containing protein0.0Showinfo_outline
241279983..281971PP_00270; HAMP domain-containing protein0.0Showinfo_outline
242281968..282630PP_00271; response regulator0.0Showinfo_outline
243282996..284216PP_00272; NnrS family protein0.0Showinfo_outline
244284441..285721PP_00273; NarK/NasA family nitrate transporter0.0Showinfo_outline
245285761..287155PP_00274; NarK family nitrate/nitrite MFS transporter0.0Showinfo_outline
246287343..291104PP_00275; nitrate reductase subunit alpha0.0Showinfo_outline
247291101..292651PP_00276; nitrate reductase subunit beta0.0Showinfo_outline
248292689..293363PP_00277; nitrate reductase molybdenum cofactor assembly chaperone0.0Showinfo_outline
249293412..294095PP_00278; respiratory nitrate reductase subunit gamma0.0Showinfo_outline
250294123..294875PP_00279; peptidylprolyl isomerase0.0Showinfo_outline
251295013..295576PP_00280; molybdopterin-guanine dinucleotide biosynthesis protein B0.0Showinfo_outline
252296197..296922PP_00281; fumarate/nitrate reduction transcriptional regulator Fnr0.0Showinfo_outline
253297096..297458PP_00282; LysR family transcriptional regulator0.0Showinfo_outline
254297649..299814PP_00283; HAMP domain-containing protein0.0Showinfo_outline
255300835..300998PP_00284; LysR family transcriptional regulator0.0Showinfo_outline
256301007..301297PP_00285; nucleotidyltransferase0.0Showinfo_outline
257301470..301982PP_00286; hypothetical protein0.0Showinfo_outline
258302196..302420PP_00287; helix-turn-helix domain-containing protein0.0Showinfo_outline
259302389..302820PP_00288; LysR family transcriptional regulator0.0Showinfo_outline
260302895..303137PP_00289; LysR family transcriptional regulator0.0Showinfo_outline
261303987..304910PP_00290; site-specific integrase0.0Showinfo_outline
262305021..305464PP_00291; DNA-binding protein0.0Showinfo_outline
263305596..305793PP_00292; cell division protein ZapA0.0Showinfo_outline
264305988..308312PP_00293; SMC family ATPase0.0Showinfo_outline
265308300..308815PP_00294; hypothetical protein0.0Showinfo_outline
266308993..310453PP_00295; metallophosphatase family protein0.0Showinfo_outline
267310550..311839PP_00296; hypothetical protein0.0Showinfo_outline
268311788..312072PP_00297; hypothetical protein0.0Showinfo_outline
269312629..313195PP_00298; hypothetical protein0.0Showinfo_outline
270313182..313865PP_00299; hypothetical protein0.0Showinfo_outline
271313871..314281PP_00300; polymer-forming cytoskeletal protein0.0Showinfo_outline
272314379..314891PP_00301; hypothetical protein0.0Showinfo_outline
273315016..315984PP_00302; DUF932 domain-containing protein0.0Showinfo_outline
274316444..318000PP_00303; hypothetical protein0.0Showinfo_outline
275318065..318454PP_00304; hypothetical protein0.0Showinfo_outline
276318754..319224PP_00305; hypothetical protein0.0Showinfo_outline
277319236..319619PP_00306; hypothetical protein0.0Showinfo_outline
278319796..320200PP_00307; hypothetical protein0.0Showinfo_outline
279320287..320760PP_00308; glycine zipper 2TM domain-containing protein0.0Showinfo_outline
280320966..321292PP_00309; hypothetical protein0.0Showinfo_outline
281321438..322241PP_00310; PRTRC system ThiF family protein0.0Showinfo_outline
282322238..322879PP_00311; PRTRC system protein A0.0Showinfo_outline
283322876..323601PP_00312; PRTRC system protein B0.0Showinfo_outline
284323611..324750PP_00313; PRTRC system protein F0.0Showinfo_outline
285324841..325065PP_00314; PRTRC system protein C0.0Showinfo_outline
286325076..325516PP_00315; PRTRC system protein E0.0Showinfo_outline
287325591..327273PP_00316; PRTRC system ParB family protein0.0Showinfo_outline
288327727..327978PP_00317; hypothetical protein0.0Showinfo_outline
289327975..331088PP_00318; helicase0.0Showinfo_outline
290331166..331873PP_00319; hypothetical protein0.0Showinfo_outline
291331936..332721PP_00320; hypothetical protein0.0Showinfo_outline
292332838..333320PP_00321; hypothetical protein0.0Showinfo_outline
293333406..333615PP_00322; hypothetical protein0.0Showinfo_outline
294333782..334303PP_00323; hypothetical protein0.0Showinfo_outline
295334463..334912PP_00324; hypothetical protein0.0Showinfo_outline
296334912..336372PP_00325; ATP-dependent helicase0.0Showinfo_outline
297336383..337612PP_00326; DUF1173 family protein0.0Showinfo_outline
298337602..337973PP_00327; hypothetical protein0.0Showinfo_outline
299337981..338163PP_00328; hypothetical protein0.0Showinfo_outline
300338445..339566PP_00329; phage Gp37/Gp68 family protein;phage Gp37/Gp68 family protein0.0Showinfo_outline
301339566..340807PP_00330; site-specific DNA-methyltransferase0.0Showinfo_outline
302340810..341082PP_00331; hypothetical protein0.0Showinfo_outline
303341140..341730PP_00332; hypothetical protein0.0Showinfo_outline
304341788..342677PP_00333; LysR family transcriptional regulator0.0Showinfo_outline
305342778..343059PP_00334; HU family DNA-binding protein0.0Showinfo_outline
306343308..344465PP_00335; Fis family transcriptional regulator0.0Showinfo_outline
307345013..345231PP_00336; hypothetical protein0.0Showinfo_outline
308345556..346554PP_00337; PRTRC system protein D0.0Showinfo_outline
309346565..347116PP_00338; hypothetical protein0.0Showinfo_outline
310347403..347609PP_00339; hypothetical protein0.0Showinfo_outline
311347712..348788PP_00340; zinc-binding protein0.0Showinfo_outline
312349008..349574PP_00341; single-stranded DNA-binding protein0.0Showinfo_outline
313349587..350372PP_00342; hypothetical protein0.0Showinfo_outline
314350381..350809PP_00343; hypothetical protein0.0Showinfo_outline
315350910..351218PP_00344; hypothetical protein0.0Showinfo_outline
316351908..353074PP_00345; hypothetical protein0.0Showinfo_outline
317353077..354249PP_00346; hypothetical protein0.0Showinfo_outline
318354360..355283PP_00347; CAP domain-containing protein0.0Showinfo_outline
319355338..355670PP_00348; hypothetical protein0.0Showinfo_outline
320355895..356917PP_00349; CAP domain-containing protein0.0Showinfo_outline
321357021..357509PP_00350; hypothetical protein0.0Showinfo_outline
322357520..358767PP_00351; shufflon system plasmid conjugative transfer pilus tip adhesin PilV0.0Showinfo_outline
323358775..359254PP_00352; hypothetical protein0.0Showinfo_outline
324359291..359791PP_00353; prepilin type IV pili0.0Showinfo_outline
325359883..360383PP_00354; prepilin type IV pili0.0Showinfo_outline
326360420..361460PP_00355; type II secretion system protein0.0Showinfo_outline
327361457..363259PP_00356; type II secretion system protein E0.0Showinfo_outline
328363256..364503PP_00357; pilus assembly protein PilO0.0Showinfo_outline
329364507..364983PP_00358; type IV pilus biogenesis protein PilP0.0Showinfo_outline
330365188..366858PP_00359; pilus assembly protein PilN0.0Showinfo_outline
331366858..367361PP_00360; hypothetical protein0.0Showinfo_outline
332367390..367824PP_00361; lytic transglycosylase0.0Showinfo_outline
333367821..369089PP_00362; pilus assembly protein PilL0.0Showinfo_outline
334369086..369883PP_00363; lytic transglycosylase0.0Showinfo_outline
335369876..371117PP_00364; conjugal transfer protein TrbI0.0Showinfo_outline
336371117..372025PP_00365; conjugal transfer protein TrbG0.0Showinfo_outline
337372041..372748PP_00366; type IV secretion system protein0.0Showinfo_outline
338373127..374176PP_00367; CpaF family protein0.0Showinfo_outline
339374196..374543PP_00368; prepilin0.0Showinfo_outline
340374547..374876PP_00369; conjugal transfer protein0.0Showinfo_outline
341374870..377326PP_00370; conjugal transfer protein0.0Showinfo_outline
342377342..378100PP_00371; conjugal transfer protein TrbJ0.0Showinfo_outline
343378118..379161PP_00372; type IV secretion system protein0.0Showinfo_outline
344379161..380417PP_00373; type VI secretion protein0.0Showinfo_outline
345380414..382279PP_00374; conjugal transfer protein TraG0.0Showinfo_outline
346382286..382792PP_00375; hypothetical protein0.0Showinfo_outline
347382767..383063PP_00376; hypothetical protein0.0Showinfo_outline
348383065..383682PP_00377; DUF4400 domain-containing protein0.0Showinfo_outline
349383737..384588PP_00378; ATPase0.0Showinfo_outline
350384766..386493PP_00379; ATP-dependent helicase0.0Showinfo_outline
351387491..388003PP_00380; hypothetical protein0.0Showinfo_outline
352388394..389761PP_00381; RepB family plasmid replication initiator protein0.0Showinfo_outline
353391124..392320PP_00382; ParA family protein0.0Showinfo_outline
354392321..393307PP_00383; ParB/RepB/Spo0J family partition protein0.0Showinfo_outline
355395005..396861PP_00384; integrase0.0Showinfo_outline
356397869..398118PP_00385; LysR family transcriptional regulator0.0Showinfo_outline
357398105..398530PP_00386; DUF2442 domain-containing protein0.0Showinfo_outline
358398570..398868PP_00387; LysR family transcriptional regulator0.0Showinfo_outline
359398931..399191PP_00388; hypothetical protein0.0Showinfo_outline
360399308..399538PP_00389; hypothetical protein0.0Showinfo_outline
361399670..399963PP_00390; hypothetical protein0.0Showinfo_outline
362400564..400803PP_00391; hypothetical protein0.0Showinfo_outline
363400858..401112PP_00392; AbrB/MazE/SpoVT family DNA-binding domain-containing protein0.0Showinfo_outline
364401112..401474PP_00393; type II toxin-antitoxin system PemK/MazF family toxin0.0Showinfo_outline
365401393..401785PP_00394; LysR family transcriptional regulator0.0Showinfo_outline
366402214..403452PP_00395; PAS domain S-box protein0.0Showinfo_outline
367403439..403753PP_00396; LysR family transcriptional regulator0.0Showinfo_outline
368403937..404128PP_00397; LysR family transcriptional regulator0.0Showinfo_outline
369404460..404735PP_00398; muconolactone Delta-isomerase0.0Showinfo_outline
370404828..405169PP_00399; 4-methylmuconolactone methylisomerase0.0Showinfo_outline
371405240..406507PP_00400; LysR family transcriptional regulator0.0Showinfo_outline
372406596..407258PP_00401; 3-oxoacid CoA-transferase subunit B0.0Showinfo_outline
373407264..407962PP_00402; 3-oxoacid CoA-transferase subunit A0.0Showinfo_outline
374408216..409130PP_00403; LysR family transcriptional regulator0.0Showinfo_outline
375409229..410119PP_00404; MBL fold metallo-hydrolase0.0Showinfo_outline
376410118..410597PP_00405; hypothetical protein0.0Showinfo_outline
377410942..411949PP_00406; tripartite tricarboxylate transporter substrate binding protein0.0Showinfo_outline
378412005..412299PP_00407; LysR family transcriptional regulator0.0Showinfo_outline
379412327..413445PP_00408; muconate cycloisomerase0.0Showinfo_outline
380413648..414625PP_00409; nitronate monooxygenase0.0Showinfo_outline
381414659..415636PP_00410; tripartite tricarboxylate transporter substrate binding protein0.0Showinfo_outline
382415766..416227PP_00411; dehydratase0.0Showinfo_outline
383416248..417855PP_00412; acyl-CoA synthetase0.0Showinfo_outline
384417930..419465PP_00413; long-chain fatty acid--CoA ligase0.0Showinfo_outline
385419493..420446PP_00414; tripartite tricarboxylate transporter substrate binding protein0.0Showinfo_outline
386420572..421498PP_00415; LysR family transcriptional regulator0.0Showinfo_outline
387421874..422824PP_00416; tripartite tricarboxylate transporter substrate binding protein0.0Showinfo_outline
388423489..424502PP_00417; tripartite tricarboxylate transporter substrate binding protein0.0Showinfo_outline
389424531..424809PP_00418; muconolactone Delta-isomerase0.0Showinfo_outline
390424845..425972PP_00419; muconate cycloisomerase0.0Showinfo_outline
391426087..426257PP_00420; LysR family transcriptional regulator0.0Showinfo_outline
392426477..428102PP_00421; transposase0.0Showinfo_outline
393428108..428977PP_00422; transposase0.0Showinfo_outline
394428952..429458PP_00423; transposase0.0Showinfo_outline
395429527..429781PP_00424; LysR family transcriptional regulator0.0Showinfo_outline
396429804..430997PP_00425; LysR family transcriptional regulator0.0Showinfo_outline
397430994..431896PP_00426; hypothetical protein0.0Showinfo_outline
398431893..432081PP_00427; hypothetical protein0.0Showinfo_outline
399432376..433395PP_00428; IS110-like element IS884 family transposase0.0Showinfo_outline
400433687..433953PP_00429; LysR family transcriptional regulator0.0Showinfo_outline
401434202..435581PP_00430; NAD(P)/FAD-dependent oxidoreductase0.0Showinfo_outline
402435725..435955PP_00431; hypothetical protein0.0Showinfo_outline
403436322..437356PP_00432; IS630-like element IS885 family transposase0.0Showinfo_outline
404437815..438852PP_00433; fructose-bisphosphate aldolase class II0.0Showinfo_outline
405438894..440132PP_00434; phosphoglycerate kinase0.0Showinfo_outline
406440142..441152PP_00435; type I glyceraldehyde-3-phosphate dehydrogenase0.0Showinfo_outline
407441212..441907PP_00436; phosphoglycolate phosphatase0.0Showinfo_outline
408441907..443919PP_00437; transketolase0.0Showinfo_outline
409443929..444807PP_00438; phosphoribulokinase0.0Showinfo_outline
410444819..445913PP_00439; class 1 fructose-bisphosphatase0.0Showinfo_outline
411445964..446689PP_00440; ribulose-phosphate 3-epimerase0.0Showinfo_outline
412446691..447455PP_00441; HAD family hydrolase0.0Showinfo_outline
413447459..448412PP_00442; CbbX protein0.0Showinfo_outline
414448569..448988PP_00443; ribulose bisphosphate carboxylase small subunit0.0Showinfo_outline
415449046..450506PP_00444; Ribulose bisphosphate carboxylase large chain, plasmid0.0Showinfo_outline
416450674..451593PP_00445; LysR family transcriptional regulator0.0Showinfo_outline

Phage Genes

Bacterial Genes

Phage Regions

GC Skew

GC Content

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Phage Genes

Bacterial Genes

Phage Regions

GC Skew

GC Content

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Click on a region or gene to view details

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